Simplify output structure #45
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Specify docker image for dev environments
Update dockerfile for dev envs
Update dockerfile
…amplesheet Use id column from samplesheet if specified
Cleanup codebase
Corrects the example command to point to the container rather than the repo
…extflow-schema
…mplesheet Use `id` from samplesheet if present
…il-color-mode Convert H&E thumbnail to RGB if RGBA or P mode
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Opened agains wrong fork |
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Per the current README.md, we had intended to simplify the output structure to remove the nested workflow run name folders. However this had not been implemented.
This PR simplifies the output structure as intended