CryVipTox_Colocalization_Study

This repository is designed to perform resolution enhancement using MSSR (Mean Shift Super Resolution microscopy) on fluorescence images. This process is followed by Manders’ coefficient analysis to evaluate the colocalization of channels.

Status: Under construction

Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
.ipynb_checkpoints		.ipynb_checkpoints
01_oib2ome-zarr_full_batch.ipynb		01_oib2ome-zarr_full_batch.ipynb
02_MSSR_Manders_Colocalization_batch.ipynb		02_MSSR_Manders_Colocalization_batch.ipynb
03_Vesicles_Organels_Toxin-Interaction_Analysis.ipynb		03_Vesicles_Organels_Toxin-Interaction_Analysis.ipynb
04_MSSR-Manders_mod1.ipynb		04_MSSR-Manders_mod1.ipynb
05_MSSR-Manders-Wavelengths_mod2.ipynb		05_MSSR-Manders-Wavelengths_mod2.ipynb
06_Gallery_of_Correlation_Methods.ipynb		06_Gallery_of_Correlation_Methods.ipynb
241109_Manders_MSSR_cat.ipynb		241109_Manders_MSSR_cat.ipynb
LICENSE		LICENSE
MSSR ROI Manders Colocalization.ipynb		MSSR ROI Manders Colocalization.ipynb
MSSR ROI Manders Colocalization_circularROIs.ipynb		MSSR ROI Manders Colocalization_circularROIs.ipynb
MSSR_Manders_Colocalization.ipynb		MSSR_Manders_Colocalization.ipynb
OME-Zarr-visualizeChannels.ipynb		OME-Zarr-visualizeChannels.ipynb
README.md		README.md
basic_cleaning.ipynb		basic_cleaning.ipynb
oib2ome-zarr.ipynb		oib2ome-zarr.ipynb
oib2ome-zarr_batch.ipynb		oib2ome-zarr_batch.ipynb
oib2zarr.ipynb		oib2zarr.ipynb
oib_properties.ipynb		oib_properties.ipynb
pair_files_by_prefix.ipynb		pair_files_by_prefix.ipynb

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