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added new object properties and hopefully fixed erineum (GALLONT_0000…
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@adeans
adeans committed Apr 3, 2024
1 parent 9ff7f14 commit 835e409
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Showing 13 changed files with 3,099 additions and 1,579 deletions.
103 changes: 53 additions & 50 deletions gallont-base.json
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Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,9 @@
"val" : "Plant Gall Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-03-27"
"val" : "2024-04-03"
} ],
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-03-27/gallont-base.json"
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-04-03/gallont-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000000",
Expand Down Expand Up @@ -673,25 +673,15 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"lbl" : "erineum",
"lbl" : "DEPRECATED erineum",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness."
},
"comments" : [ "logic needed to be fixed" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "http://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2023-08-01T21:56:59Z"
}, {
"pred" : "http://purl.org/dc/terms/source",
"val" : "https://lccn.loc.gov/41001073"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://www.inaturalist.org/observations/79701805"
} ]
"val" : "http://purl.obolibrary.org/obo/GALLONT_0000048"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000034",
Expand Down Expand Up @@ -927,6 +917,22 @@
"val" : "2024-03-25T19:40:19Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"lbl" : "erineum",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2023-08-01T21:56:59Z"
} ]
}
} ],
"edges" : [ {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000002",
Expand Down Expand Up @@ -1064,26 +1070,6 @@
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000032",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PATO_0001543"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/UBERON_0001062"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
"obj" : "http://purl.obolibrary.org/obo/PO_0025034"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
"obj" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "http://purl.obolibrary.org/obo/GALLONT_0000000",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000034",
"pred" : "is_a",
Expand Down Expand Up @@ -1200,21 +1186,28 @@
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000047",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_131567"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OBI_0100026"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/UBERON_0001062"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
"obj" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "http://purl.obolibrary.org/obo/RO_0002453",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
} ],
"logicalDefinitionAxioms" : [ {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0025034"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000051",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/GALLONT_0000000",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000035",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
Expand Down Expand Up @@ -1247,6 +1240,16 @@
"propertyId" : "http://purl.obolibrary.org/obo/RO_0000086",
"fillerId" : "http://purl.obolibrary.org/obo/PATO_0002078"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000051",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/RO_0002453",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
} ]
} ]
} ]
}
38 changes: 21 additions & 17 deletions gallont-base.obo
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Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
format-version: 1.2
data-version: gallont/releases/2024-03-27/gallont-base.owl
data-version: gallont/releases/2024-04-03/gallont-base.owl
ontology: gallont/gallont-base
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/description "None" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://purl.org/dc/terms/title "Plant Gall Ontology" xsd:string
property_value: owl:versionInfo "2024-03-27" xsd:string
property_value: owl:versionInfo "2024-04-03" xsd:string

[Term]
id: GALLONT:0000001
Expand Down Expand Up @@ -317,21 +317,10 @@ property_value: http://purl.org/dc/terms/date "2023-06-27T01:41:01Z" xsd:string

[Term]
id: GALLONT:0000033
name: erineum
def: "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness." []
is_a: GALLONT:0000025 ! plant gall
is_a: UBERON:0001062
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: BFO:0000050 PO:0025034
intersection_of: BFO:0000051 PO:0006504
intersection_of: GALLONT:0000000 NCBITaxon:6946 ! has associate
relationship: BFO:0000050 PO:0025034
relationship: BFO:0000051 PO:0006504
relationship: GALLONT:0000000 NCBITaxon:6946 ! has associate
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T21:56:59Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
property_value: seeAlso https://www.inaturalist.org/observations/79701805
name: DEPRECATED erineum
comment: logic needed to be fixed
property_value: seeAlso GALLONT:0000048
is_obsolete: true

[Term]
id: GALLONT:0000034
Expand Down Expand Up @@ -474,6 +463,21 @@ is_a: NCBITaxon:131567
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:40:19Z" xsd:dateTime

[Term]
id: GALLONT:0000048
name: erineum
def: "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness." []
is_a: GALLONT:0000025 ! plant gall
is_a: OBI:0100026
is_a: UBERON:0001062
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: BFO:0000051 PO:0006504
intersection_of: RO:0002453 NCBITaxon:6946
relationship: BFO:0000051 PO:0006504
relationship: RO:0002453 NCBITaxon:6946
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T21:56:59Z" xsd:string

[Typedef]
id: GALLONT:0000000
name: has associate
Expand Down
106 changes: 59 additions & 47 deletions gallont-base.owl
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Expand Up @@ -11,12 +11,12 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dcterms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/gallont/gallont-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gallont/releases/2024-03-27/gallont-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gallont/releases/2024-04-03/gallont-base.owl"/>
<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<dcterms:description>None</dcterms:description>
<dcterms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<dcterms:title>Plant Gall Ontology</dcterms:title>
<owl:versionInfo>2024-03-27</owl:versionInfo>
<owl:versionInfo>2024-04-03</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -132,6 +132,12 @@



<!-- http://purl.obolibrary.org/obo/RO_0002453 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002453"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
Expand Down Expand Up @@ -609,51 +615,10 @@
<!-- http://purl.obolibrary.org/obo/GALLONT_0000033 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GALLONT_0000033">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GALLONT_0000025"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0025034"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0006504"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/GALLONT_0000000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_6946"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GALLONT_0000025"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0025034"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0006504"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/GALLONT_0000000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_6946"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness.</obo:IAO_0000115>
<dcterms:creator rdf:resource="http://orcid.org/0000-0002-2119-4663"/>
<dcterms:date>2023-08-01T21:56:59Z</dcterms:date>
<dcterms:source rdf:resource="https://lccn.loc.gov/41001073"/>
<rdfs:label xml:lang="en">erineum</rdfs:label>
<rdfs:seeAlso rdf:resource="https://www.inaturalist.org/observations/79701805"/>
<rdfs:comment>logic needed to be fixed</rdfs:comment>
<rdfs:label xml:lang="en">DEPRECATED erineum</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/GALLONT_0000048"/>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>


Expand Down Expand Up @@ -944,6 +909,47 @@



<!-- http://purl.obolibrary.org/obo/GALLONT_0000048 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GALLONT_0000048">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GALLONT_0000025"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0006504"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002453"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_6946"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GALLONT_0000025"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0006504"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002453"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_6946"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness.</obo:IAO_0000115>
<dcterms:creator rdf:resource="https://orcid.org/0000-0002-2119-4663"/>
<dcterms:date>2023-08-01T21:56:59Z</dcterms:date>
<rdfs:label>erineum</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/NCBITaxon_109362 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_109362"/>
Expand Down Expand Up @@ -980,6 +986,12 @@



<!-- http://purl.obolibrary.org/obo/OBI_0100026 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>



<!-- http://purl.obolibrary.org/obo/PATO_0000051 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000051"/>
Expand Down
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