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added description, updated pages, some new classes
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@adeans
adeans committed Apr 19, 2024
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182 changes: 171 additions & 11 deletions gallont-base.json
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"val" : "http://purl.obolibrary.org/obo/IAO_8000001"
}, {
"pred" : "http://purl.org/dc/terms/description",
"val" : "None"
"val" : "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls."
}, {
"pred" : "http://purl.org/dc/terms/license",
"val" : "https://creativecommons.org/publicdomain/zero/1.0/"
Expand All @@ -16,9 +16,9 @@
"val" : "Plant Gall Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-04-08"
"val" : "2024-04-19"
} ],
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-04-08/gallont-base.json"
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-04-19/gallont-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000000",
Expand Down Expand Up @@ -933,6 +933,131 @@
"val" : "2023-08-01T21:56:59Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000049",
"lbl" : "plant gall cluster",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A multi-tissue plant structure (PO:0025496) that has as parts multiple individual plant galls (GALLONT:0000025) in ane aggregation."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-04-11T14:32:57Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000050",
"lbl" : "zoocecidium",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A plant gall that is induced by an animal"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-04-15T13:33:50Z"
}, {
"pred" : "http://purl.org/dc/terms/source",
"val" : "https://doi.org/10.1007/978-94-017-6230-4_9"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000051",
"lbl" : "plant gall abscission zone",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An abscission zone (PO:0000146) that is part of a plant gall."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/pato#seeAlso",
"val" : "https://www.inaturalist.org/observations/129032167"
}, {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-04-18T13:34:27Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000052",
"lbl" : "hasDiameterInMm",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-27T01:25:52Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000053",
"lbl" : "plant gall dehiscence zone",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A dehiscence zone that is part of a plant gall. This zone corresponds to the site of rupture in a plant gall."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/pato#seeAlso",
"val" : "https://www.inaturalist.org/observations/179039203"
}, {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-04-18T14:16:58Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"lbl" : "induced by",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_1000041",
"lbl" : "hasLengthInMm",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "For use with integral galls" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-04-11T14:02:15Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_1000060",
"lbl" : "hasHeightInMm",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-27T17:30:29Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_1000062",
"lbl" : "has seasonal maturity",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_1000150",
"lbl" : "has seasonal emergence",
"type" : "PROPERTY"
} ],
"edges" : [ {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000002",
Expand Down Expand Up @@ -1185,15 +1310,11 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000047",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_131567"
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_1934078"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OBI_0100026"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000050"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "is_a",
Expand All @@ -1204,8 +1325,40 @@
"obj" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000048",
"pred" : "http://purl.obolibrary.org/obo/RO_0002453",
"pred" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000049",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PO_0025496"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000049",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000050",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000050",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OBI_0100026"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000050",
"pred" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_33208"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000051",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/http://purl.obolibrary.org/obo/PO_0000146"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000053",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PO_0025092"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"pred" : "subPropertyOf",
"obj" : "http://purl.obolibrary.org/obo/RO_0002440"
} ],
"logicalDefinitionAxioms" : [ {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000035",
Expand Down Expand Up @@ -1247,9 +1400,16 @@
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000051",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0006504"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/RO_0002453",
"propertyId" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_6946"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000050",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/GALLONT_0000059",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_33208"
} ]
} ]
} ]
}
69 changes: 61 additions & 8 deletions gallont-base.obo
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Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
format-version: 1.2
data-version: gallont/releases/2024-04-08/gallont-base.owl
data-version: gallont/releases/2024-04-19/gallont-base.owl
ontology: gallont/gallont-base
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/description "None" xsd:string
property_value: http://purl.org/dc/terms/description "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls." xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://purl.org/dc/terms/title "Plant Gall Ontology" xsd:string
property_value: owl:versionInfo "2024-04-08" xsd:string
property_value: owl:versionInfo "2024-04-19" xsd:string

[Term]
id: GALLONT:0000001
Expand Down Expand Up @@ -459,29 +459,82 @@ property_value: http://purl.org/dc/terms/date "2024-03-25T19:39:17Z" xsd:dateTim
[Term]
id: GALLONT:0000047
name: Acraspis gemula
is_a: NCBITaxon:131567
is_a: NCBITaxon:1934078
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:40:19Z" xsd:dateTime

[Term]
id: GALLONT:0000048
name: erineum
def: "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness." []
is_a: GALLONT:0000025 ! plant gall
is_a: OBI:0100026
is_a: GALLONT:0000050 ! zoocecidium
is_a: UBERON:0001062
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: BFO:0000051 PO:0006504
intersection_of: RO:0002453 NCBITaxon:6946
intersection_of: GALLONT:0000059 NCBITaxon:6946 ! induced by
relationship: BFO:0000051 PO:0006504
relationship: RO:0002453 NCBITaxon:6946
relationship: GALLONT:0000059 NCBITaxon:6946 ! induced by
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T21:56:59Z" xsd:string

[Term]
id: GALLONT:0000049
name: plant gall aggregate
name: plant gall cluster
def: "A multi-tissue plant structure (PO:0025496) that has as parts multiple individual plant galls (GALLONT:0000025) in ane aggregation." []
is_a: PO:0025496
relationship: BFO:0000051 GALLONT:0000025 ! plant gall
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-11T14:32:57Z" xsd:dateTime

[Term]
id: GALLONT:0000050
name: zoocecidium
def: "A plant gall that is induced by an animal" []
is_a: GALLONT:0000025 ! plant gall
is_a: OBI:0100026
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000059 NCBITaxon:33208 ! induced by
relationship: GALLONT:0000059 NCBITaxon:33208 ! induced by
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-15T13:33:50Z" xsd:dateTime
property_value: http://purl.org/dc/terms/source 978-94-017-6230-4:9

[Term]
id: GALLONT:0000051
name: plant gall abscission zone
def: "An abscission zone (PO:0000146) that is part of a plant gall." []
is_a: PO:0000146
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-18T13:34:27Z" xsd:dateTime
property_value: seeAlso https://www.inaturalist.org/observations/129032167

[Term]
id: GALLONT:0000053
name: plant gall dehiscence zone
def: "A dehiscence zone that is part of a plant gall. This zone corresponds to the site of rupture in a plant gall." []
is_a: PO:0025092
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-18T14:16:58Z" xsd:dateTime
property_value: seeAlso https://www.inaturalist.org/observations/179039203

[Typedef]
id: GALLONT:0000000
name: has associate
comment: Relationship that specifies which organism is associated with a class.
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-01-24T01:49:45Z" xsd:string

[Typedef]
id: GALLONT:0000059
name: induced by
is_a: RO:0002440

[Typedef]
id: GALLONT:1000062
name: has seasonal maturity

[Typedef]
id: GALLONT:1000150
name: has seasonal emergence

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