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updating files after adjusting the plant gall classes and adding taxa
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@adeans
adeans committed Mar 25, 2024
1 parent 99d2586 commit dbc8294
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203 changes: 175 additions & 28 deletions gallont-base.json
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Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,9 @@
"val" : "Plant Gall Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-03-14"
"val" : "2024-03-25"
} ],
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-03-14/gallont-base.json"
"version" : "http://purl.obolibrary.org/obo/gallont/releases/2024-03-25/gallont-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000000",
Expand All @@ -36,22 +36,15 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000001",
"lbl" : "plant gall",
"lbl" : "DEPRECATED plant gall",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A multi-tissue plant structure, whose development is induced by an organism for the benefit of that organism."
},
"comments" : [ "Updated the class definition to reflect that this structure is a response to biotic stress" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2023-06-19T19:39:13Z"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://www.inaturalist.org/observations/62135900"
} ]
"val" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000002",
Expand Down Expand Up @@ -520,6 +513,25 @@
"val" : "https://www.inaturalist.org/observations/47442195"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000025",
"lbl" : "plant gall",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A multi-tissue plant structure (PO:0025496) that develops in response to a biotic stress (PSO:0000004)."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/pato#seeAlso",
"val" : "https://www.inaturalist.org/observations/62135900"
}, {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-24T21:38:29Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000026",
"lbl" : "faceted",
Expand Down Expand Up @@ -791,6 +803,19 @@
"val" : "https://www.inaturalist.org/observations/33495996"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000039",
"lbl" : "Acraspis erinacei (agamic)",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T19:27:00Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000040",
"lbl" : "nutritive tissue",
Expand Down Expand Up @@ -824,12 +849,86 @@
"val" : "2024-01-19T02:27:40Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000042",
"lbl" : "Quercus sect. Quercus",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T01:26:41Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000043",
"lbl" : "Disholcaspis quercusglobulus (sexgen)",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T01:28:09Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000044",
"lbl" : "Disholcaspis quercusglobulus (agamic)",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T01:28:48Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000045",
"lbl" : "Acraspis erinacei (sexgen)",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T19:27:17Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000046",
"lbl" : "Aceria triplacis",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T19:39:17Z"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/GALLONT_0000047",
"lbl" : "Acraspis gemula",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/creator",
"val" : "https://orcid.org/0000-0002-2119-4663"
}, {
"pred" : "http://purl.org/dc/terms/date",
"val" : "2024-03-25T19:40:19Z"
} ]
}
} ],
"edges" : [ {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000001",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PO_0025496"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000002",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PO_0025117"
Expand All @@ -844,7 +943,7 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000004",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000005",
"pred" : "is_a",
Expand Down Expand Up @@ -933,6 +1032,10 @@
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000024",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PATO_0001925"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000025",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PO_0025496"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000026",
"pred" : "is_a",
Expand Down Expand Up @@ -964,7 +1067,7 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"pred" : "is_a",
Expand All @@ -984,23 +1087,23 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000034",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000034",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
"obj" : "http://purl.obolibrary.org/obo/PO_0025034"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000035",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000035",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
"obj" : "http://purl.obolibrary.org/obo/PO_0000055"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000036",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000036",
"pred" : "http://purl.obolibrary.org/obo/RO_0000086",
Expand All @@ -1020,7 +1123,7 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000037",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000001"
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000025"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000037",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
Expand All @@ -1041,6 +1144,14 @@
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000038",
"pred" : "http://purl.obolibrary.org/obo/BFO_0000051",
"obj" : "http://purl.obolibrary.org/obo/PO_0006001"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000039",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/CARO_0000030"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000039",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_2714064"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000040",
"pred" : "is_a",
Expand All @@ -1053,10 +1164,46 @@
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000041",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/GALLONT_0000003"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000042",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_3511"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000043",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/CARO_0000048"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000043",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_1540852"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000044",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/CARO_0000030"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000044",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_1540852"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000045",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/CARO_0000048"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000045",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_2714064"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000046",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_109362"
}, {
"sub" : "http://purl.obolibrary.org/obo/GALLONT_0000047",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_131567"
} ],
"logicalDefinitionAxioms" : [ {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000033",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000001" ],
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0025034"
Expand All @@ -1069,14 +1216,14 @@
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000035",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000001" ],
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/PO_0000055"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000036",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000001" ],
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/RO_0000086",
"fillerId" : "http://purl.obolibrary.org/obo/GALLONT_0000009"
Expand All @@ -1092,7 +1239,7 @@
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/GALLONT_0000037",
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000001" ],
"genusIds" : [ "http://purl.obolibrary.org/obo/GALLONT_0000025" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000051",
"fillerId" : "http://purl.obolibrary.org/obo/GALLONT_0000006"
Expand Down
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