Skip to content

Commit

Permalink
update input/ README
Browse files Browse the repository at this point in the history
  • Loading branch information
Adelene LAI committed Aug 4, 2022
1 parent 7fbbd0b commit 3635ab3
Showing 1 changed file with 1 addition and 18 deletions.
19 changes: 1 addition & 18 deletions input/README.md
Original file line number Diff line number Diff line change
@@ -1,18 +1 @@
## COCONUT
COCONUT_DB_2021-11.smi was downloaded from https://coconut.naturalproducts.net/downloaded on 2022-03-16 and converted to COCONUT_DB_2021.txt by running the following in a UNIX command line:

```
tr -s '[:blank:]' ',' <COCONUT_DB_2021-11.smi >COCONUT_DB_2021-11.txt
```

Then, the following header added to COCONUT_DB_2021-11.txt: "SMILES, Name"



## NORMAN-SLE
pubchem_norman_sle_tree_parentcid_98116_2022-03-21_from115115.csv was downloaded from the PubChem Classification Browser's 'NORMAN Suspect List Exchange Classification' https://pubchem.ncbi.nlm.nih.gov/classification/#hid=101 on 2022-03-21 after conversion into CIDs using Operator Type: ‘Parent CID’ in the PubChem Identifier Exchange Service via Entrez to remove salts, charged ions, and mixtures. Further details in the publication.



##PubChemLite for Exposomics
PubChemLite_exposomics_20220225.csv was downloaded from https://zenodo.org/record/6383860. The copy of this file is unchanged from the Zenodo record, just provided here for completeness.
The datasets here are smaller samples of the full versions available on Zenodo: https://zenodo.org/record/6958827

0 comments on commit 3635ab3

Please sign in to comment.