python3

admin/docker/4.0-dev-tex/Dockerfile

@@ -0,0 +1,73 @@
+# pull ubuntu 18.04 from Docker repo
+FROM ubuntu:18.04
+
+MAINTAINER "Zhicheng Geng <[email protected]>"
+
+# install packages for madagascar
+RUN apt-get update && apt-get install -y \
+        git \
+        python2.7 \
+        python-pip \
+        openssh-client \
+        tar \
+        gzip \
+        wget \
+        vim \
+        emacs \
+        make \
+        man \
+ && apt-get install -y \
+        libblas-dev \
+        liblapack-dev \
+        swig \
+        libxaw7-dev \
+        freeglut3-dev \
+        libnetpbm10-dev \
+        libtiff5-dev \
+        libgd-dev \
+        libplplot-dev \
+        libavcodec-dev \
+        libcairo2-dev \
+        libjpeg-dev \
+        libopenmpi-dev \
+        libfftw3-dev \
+        libsuitesparse-dev \
+ && apt-get clean \
+ && rm -rf /var/lib/apt/lists/*
+
+# install python packages
+RUN pip install numpy scipy
+
+# get code from github
+RUN git clone https://github.com/ahay/src.git $HOME/RSFSRC
+
+# set environment variable for installing madagascar
+ENV RSFROOT /root/RSFROOT
+
+# install madagascar
+RUN cd ~/RSFSRC \
+ && ./configure \
+ && make install
+
+# install latex
+RUN apt-get update && apt-get install -y \
+        texlive-latex-recommended \
+		texlive-latex-extra \
+		texlive-fonts-recommended \
+		texlive-bibtex-extra \
+		texlive-lang-english \
+		texlive-generic-extra \
+		biber \
+        --no-install-recommends \
+ && rm -rf /var/lib/apt/lists/*
+
+# install segtex
+RUN git clone https://github.com/SEGTeX/texmf $HOME/texmf \
+ && texhash
+
+RUN echo 'export RSFROOT="$HOME/RSFROOT"'                   >> $HOME/.bashrc \
+ && echo 'source $RSFROOT/share/madagascar/etc/env.sh'      >> $HOME/.bashrc
+
+WORKDIR /root
+
+CMD ["/bin/bash"]

api/python/SConstruct

@@ -47,7 +47,7 @@ if env.get('SWIG') and env.get('NUMPY'):
         import numpy
         numpy_loc = os.path.split(numpy.__file__)[0]
         pythinc.append(os.path.join(numpy_loc,'numarray','numpy'))
-	if int(numpy.__version.split(".")[0]) >=2:
+        if int(numpy.__version__.split(".")[0]) >=2:
             pythinc.append(os.path.join(numpy_loc,'_core','include'))
         else:
             pythinc.append(os.path.join(numpy_loc,'core','include'))

configure

@@ -91,7 +91,7 @@ if test "$scons" = "no"; then
         dir=`ls -d [Ss][Cc]ons-4.* | grep '[^mz]$'`
         cd $dir
         export PYTHONUSERBASE="$root"
-        $python -m pip install . --user --no-warn-script-location > /dev/null
+        $python -m pip install . --user --no-warn-script-location --break-system-packages > /dev/null
     else 
     # if python version <3
         archive=`ls [Ss][Cc]ons-3.*.tar.gz`