Bioinformatics | Systems biology | SARS-CoV-2 genome epidemiology & pathogen metabolism reconstruction
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PathoGenOmics-Lab/VIPERA
PathoGenOmics-Lab/VIPERA PublicA Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
Python 3
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PathoGenOmics-Lab/tcfinder
PathoGenOmics-Lab/tcfinder PublicA lightweight tool to find clusters of samples within a phylogeny.
Rust 1
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PathoGenOmics-Lab/transcluster
PathoGenOmics-Lab/transcluster PublicA Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny and estimate their transmission fitness
Python 2
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