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Aiden Lab

The Center for Genome Architecture

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  1. juicer juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Shell 458 190

  2. Juicebox Juicebox Public

    Visualization and analysis software for Hi-C data -

    Java 270 60

  3. 3d-dna 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    Shell 215 56

  4. straw straw Public

    Extract data quickly from Juicebox via straw

    C++ 69 35

  5. BEAR BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    Shell 6 1

  6. EigenVector EigenVector Public

    Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    C 8 4

Repositories

Showing 10 of 32 repositories
  • juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    aidenlab/juicer’s past year of commit activity
    Shell 458 MIT 190 97 8 Updated Aug 31, 2025
  • straw Public

    Extract data quickly from Juicebox via straw

    aidenlab/straw’s past year of commit activity
    C++ 69 MIT 35 32 1 Updated Apr 6, 2025
  • juicebox.js Public

    HiC contact matrix visualization

    aidenlab/juicebox.js’s past year of commit activity
    JavaScript 22 MIT 14 22 0 Updated Mar 18, 2025
  • juicebox-web Public
    aidenlab/juicebox-web’s past year of commit activity
    JavaScript 3 1 3 0 Updated Mar 18, 2025
  • juicebox.js_AL Public Forked from aidenlab/juicebox.js

    HiC contact matrix visualization

    aidenlab/juicebox.js_AL’s past year of commit activity
    JavaScript 0 MIT 14 0 0 Updated Feb 15, 2025
  • hic-straw Public

    Command line and web utilities for reading .hic contact matrix files

    aidenlab/hic-straw’s past year of commit activity
    JavaScript 10 MIT 4 0 0 Updated Feb 3, 2025
  • Juicebox Public

    Visualization and analysis software for Hi-C data -

    aidenlab/Juicebox’s past year of commit activity
    Java 270 MIT 60 258 (2 issues need help) 3 Updated Aug 6, 2024
  • sw2stl Public
    aidenlab/sw2stl’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 2, 2024
  • 3d-carta Public
    aidenlab/3d-carta’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 22, 2024
  • clear-tools Public Forked from sa501428/clear-tools

    Chromatin Landscape Exploration, Analysis, and Research Tools

    aidenlab/clear-tools’s past year of commit activity
    Java 0 MIT 2 0 0 Updated Apr 26, 2024
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