Sync schemas

airr-community · Nov 7, 2024 · cce590e · cce590e
1 parent 0da92d8
commit cce590e
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diff --git a/lang/R/inst/extdata/airr-schema.yaml b/lang/R/inst/extdata/airr-schema.yaml
@@ -91,6 +91,7 @@ CURIEMap:
         type: identifier
         default:
             map: IEDB_RECEPTOR
+            provider: IEDB_RECEPTOR
         map:
             IEDB_RECEPTOR:
                 iri_prefix: "https://www.iedb.org/receptor/"
@@ -180,6 +181,15 @@ InformationProvider:
             request:
                 url: "{iri}"
                 response: text/html
+        IEDB_RECEPTOR:
+            request:
+                url: "https://query-api.iedb.org/tcr_search?receptor_group_id=eq.{local_id}"
+                url: "https://query-api.iedb.org/tcr_search?receptor_group_id=eq.{local_id}"
+                response: application/json
+        IEDB_EPITOPE:
+            request:
+                url: "https://query-api.iedb.org/epitope_search?structure_id=eq.{local_id}"
+                response: application/json
         OLS:
             request:
                 url: "https://www.ebi.ac.uk/ols/api/ontologies/{ontology_id}/terms?iri={iri}"

diff --git a/lang/python/airr/specs/airr-schema.yaml b/lang/python/airr/specs/airr-schema.yaml
@@ -91,6 +91,7 @@ CURIEMap:
         type: identifier
         default:
             map: IEDB_RECEPTOR
+            provider: IEDB_RECEPTOR
         map:
             IEDB_RECEPTOR:
                 iri_prefix: "https://www.iedb.org/receptor/"
@@ -180,6 +181,15 @@ InformationProvider:
             request:
                 url: "{iri}"
                 response: text/html
+        IEDB_RECEPTOR:
+            request:
+                url: "https://query-api.iedb.org/tcr_search?receptor_group_id=eq.{local_id}"
+                url: "https://query-api.iedb.org/tcr_search?receptor_group_id=eq.{local_id}"
+                response: application/json
+        IEDB_EPITOPE:
+            request:
+                url: "https://query-api.iedb.org/epitope_search?structure_id=eq.{local_id}"
+                response: application/json
         OLS:
             request:
                 url: "https://www.ebi.ac.uk/ols/api/ontologies/{ontology_id}/terms?iri={iri}"