Deploy preview for PR 18 🛫

pr-preview/pr-18/Acknowledgement/index.html

@@ -206,9 +206,9 @@ <h1 id="class-acknowledgement">Class: Acknowledgement</h1>
     click Acknowledgement href "../Acknowledgement"
       Acknowledgement : acknowledgement_id
 
-      Acknowledgement : institution_name
+      Acknowledgement : individual_full_name
 
-      Acknowledgement : name
+      Acknowledgement : institution_name
 
       Acknowledgement : orcid_id
 
@@ -233,9 +233,9 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
+<td><a href="../individual_full_name/">individual_full_name</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>A human-readable name for a thing</td>
+<td>Full name of individual</td>
 <td>direct</td>
 </tr>
 <tr>
@@ -309,7 +309,7 @@ <h3 id="direct">Direct</h3>
 from_schema: https://github.com/airr-knowledge/ak-schema
 slots:
 - acknowledgement_id
-- name
+- individual_full_name
 - institution_name
 - orcid_id
 
@@ -334,16 +334,18 @@ <h3 id="induced">Induced</h3>
     domain_of:
     - Acknowledgement
     range: string
-  name:
-    name: name
-    description: A human-readable name for a thing
+  individual_full_name:
+    name: individual_full_name
+    annotations:
+      nullable:
+        tag: nullable
+        value: true
+    description: Full name of individual
     from_schema: https://github.com/airr-knowledge/ak-schema
     rank: 1000
-    slot_uri: schema:name
-    alias: name
+    alias: individual_full_name
     owner: Acknowledgement
     domain_of:
-    - NamedThing
     - Acknowledgement
     range: string
   institution_name:

pr-preview/pr-18/Alignment/index.html

@@ -575,6 +575,7 @@ <h3 id="induced">Induced</h3>
     - Alignment
     - Rearrangement
     - Clone
+    - Cell
     - CellExpression
     range: string
 

pr-preview/pr-18/AlleleDescription/index.html

@@ -436,7 +436,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../release_version/">release_version</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
 <td></td>
 <td>direct</td>
 </tr>
@@ -509,7 +509,7 @@ <h2 id="slots">Slots</h2>
 <tr>
 <td><a href="../species/">species</a></td>
 <td>0..1 <br/> <a href="../Species/">Species</a></td>
-<td>The species of a participant</td>
+<td>Binomial designation of subject's species</td>
 <td>direct</td>
 </tr>
 <tr>
@@ -908,7 +908,7 @@ <h3 id="induced">Induced</h3>
     domain_of:
     - AlleleDescription
     - GermlineSet
-    range: string
+    range: integer
   release_date:
     name: release_date
     annotations:
@@ -948,7 +948,6 @@ <h3 id="induced">Induced</h3>
     alias: label
     owner: AlleleDescription
     domain_of:
-    - TimePoint
     - AlleleDescription
     - DocumentedAllele
     - DeletedGene
@@ -1070,10 +1069,13 @@ <h3 id="induced">Induced</h3>
     range: InferenceType
   species:
     name: species
-    description: The species of a participant
+    annotations:
+      nullable:
+        tag: nullable
+        value: false
+    description: Binomial designation of subject's species
     from_schema: https://github.com/airr-knowledge/ak-schema
     rank: 1000
-    slot_uri: rdf:type
     alias: species
     owner: AlleleDescription
     domain_of:

pr-preview/pr-18/AlphaBetaTCR/index.html

@@ -383,7 +383,6 @@ <h3 id="induced">Induced</h3>
     owner: AlphaBetaTCR
     domain_of:
     - NamedThing
-    - Acknowledgement
     range: string
   description:
     name: description

pr-preview/pr-18/Assay/index.html

@@ -477,7 +477,6 @@ <h3 id="induced">Induced</h3>
     owner: Assay
     domain_of:
     - NamedThing
-    - Acknowledgement
     range: string
   description:
     name: description

pr-preview/pr-18/Assessment/index.html

@@ -427,8 +427,6 @@ <h3 id="induced">Induced</h3>
     domain_of:
     - TCellReceptorEpitopeBindingAssay
     - Assessment
-    - TimePoint
-    - CellExpression
     range: string
   unit:
     name: unit
@@ -440,7 +438,6 @@ <h3 id="induced">Induced</h3>
     domain_of:
     - TCellReceptorEpitopeBindingAssay
     - Assessment
-    - TimePoint
     range: string
   name:
     name: name
@@ -452,7 +449,6 @@ <h3 id="induced">Induced</h3>
     owner: Assessment
     domain_of:
     - NamedThing
-    - Acknowledgement
     range: string
   description:
     name: description

pr-preview/pr-18/BCellReceptor/index.html

@@ -385,7 +385,6 @@ <h3 id="induced">Induced</h3>
     owner: BCellReceptor
     domain_of:
     - NamedThing
-    - Acknowledgement
     range: string
   description:
     name: description

pr-preview/pr-18/BiologicalSex/index.html → pr-preview/pr-18/BiologicalSexOntology/index.html

@@ -8,14 +8,14 @@
 
 
 
-        <link rel="canonical" href="https://airr-knowledge.github.io/ak-schema/BiologicalSex/">
+        <link rel="canonical" href="https://airr-knowledge.github.io/ak-schema/BiologicalSexOntology/">
 
       <link rel="icon" href="../assets/images/favicon.png">
       <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-8.5.10">
 
 
 
-        <title>Enum: BiologicalSex - ak-schema</title>
+        <title>Enum: BiologicalSexOntology - ak-schema</title>
 
 
 
@@ -64,7 +64,7 @@
     <div data-md-component="skip">
 
 
-        <a href="#enum-biologicalsex" class="md-skip">
+        <a href="#enum-biologicalsexontology" class="md-skip">
           Skip to content
         </a>
 
@@ -97,7 +97,7 @@
         <div class="md-header__topic" data-md-component="header-topic">
           <span class="md-ellipsis">
 
-              Enum: BiologicalSex
+              Enum: BiologicalSexOntology
 
           </span>
         </div>
@@ -310,14 +310,14 @@
 
 
 
-  <a href="https://github.com/airr-knowledge/ak-schema/edit/master/docs/BiologicalSex.md" title="Edit this page" class="md-content__button md-icon">
+  <a href="https://github.com/airr-knowledge/ak-schema/edit/master/docs/BiologicalSexOntology.md" title="Edit this page" class="md-content__button md-icon">
 
     <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25Z"/></svg>
   </a>
 
 
-<h1 id="enum-biologicalsex">Enum: BiologicalSex</h1>
-<p>URI: <a href="./">BiologicalSex</a></p>
+<h1 id="enum-biologicalsexontology">Enum: BiologicalSexOntology</h1>
+<p>URI: <a href="./">BiologicalSexOntology</a></p>
 <h2 id="permissible-values">Permissible Values</h2>
 <table>
 <thead>
@@ -363,7 +363,7 @@ <h3 id="schema-source">Schema Source</h3>
 <h2 id="linkml-source">LinkML Source</h2>
 <details>
 
-<pre><code class="language-yaml">name: BiologicalSex
+<pre><code class="language-yaml">name: BiologicalSexOntology
 from_schema: https://github.com/airr-knowledge/ak-schema
 rank: 1000
 permissible_values: