Skip to content

Commit

Permalink
deploy: 36a5199
Browse files Browse the repository at this point in the history
  • Loading branch information
ajdawson committed Oct 7, 2023
0 parents commit d2c05e2
Show file tree
Hide file tree
Showing 51 changed files with 19,047 additions and 0 deletions.
4 changes: 4 additions & 0 deletions .buildinfo
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: aef2db51fca915dcbae0e0464fa00164
tags: 645f666f9bcd5a90fca523b33c5a78b7
Empty file added .nojekyll
Empty file.
308 changes: 308 additions & 0 deletions _modules/gridfill/gridfill.html

Large diffs are not rendered by default.

104 changes: 104 additions & 0 deletions _modules/index.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,104 @@
<!DOCTYPE html>
<html class="writer-html5" lang="en" >
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &mdash; gridfill 1.1.0 documentation</title>
<link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
<script src="../_static/js/html5shiv.min.js"></script>
<![endif]-->

<script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
<script src="../_static/jquery.js"></script>
<script src="../_static/underscore.js"></script>
<script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
<script src="../_static/doctools.js"></script>
<script src="../_static/sphinx_highlight.js"></script>
<script src="../_static/js/theme.js"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
</head>

<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search" >



<a href="../index.html" class="icon icon-home">
gridfill
</a>
<div class="version">
1.1.0
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul>
<li class="toctree-l1"><a class="reference internal" href="../api.html"><code class="xref py py-obj docutils literal notranslate"><span class="pre">gridfill</span></code> API</a></li>
</ul>

</div>
</div>
</nav>

<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="../index.html">gridfill</a>
</nav>

<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
<li class="breadcrumb-item active">Overview: module code</li>
<li class="wy-breadcrumbs-aside">
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">

<h1>All modules for which code is available</h1>
<ul><li><a href="gridfill/gridfill.html">gridfill.gridfill</a></li>
</ul>

</div>
</div>
<footer>

<hr/>

<div role="contentinfo">
<p>&#169; Copyright 2012-2023, Andrew Dawson.</p>
</div>

Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
<a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
provided by <a href="https://readthedocs.org">Read the Docs</a>.


</footer>
</div>
</div>
</section>
</div>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
});
</script>

</body>
</html>
9 changes: 9 additions & 0 deletions _sources/api.rst.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
.. default-role:: py:obj

.. currentmodule:: gridfill

`gridfill` API
==============

.. automodule :: gridfill
:members: fill, fill_cube
73 changes: 73 additions & 0 deletions _sources/index.rst.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
.. default-role:: py:obj

.. toctree::
:maxdepth: 2
:hidden:

api


Gridfill
========

Gridfill is a Python package for filling in missing values in gridded data.
Missing values are filled by solving Poisson's equation using an iterative relaxation scheme at the missing values, resulting in a smooth filling.

The core package runs on Python 3, on Linux and OSX (maybe on Windows too), and requires numpy_.
Gridfill has an optional interface for working with iris_ cubes.


How to Install
--------------

The easiest way to install is using the conda_ package manager::

conda install -c conda-forge gridfill

If you want to install from source you will need to have setuptools_, cython_, and numpy_ installed before you start.
Once you have the dependencies installation should be as simple as entering the gridfill source directory and doing::

python setup.py install


Getting Started
---------------

Gridfill has one core function `gridfill.fill`.
This function accepts a masked array array as input, as well as some parameters that control the numerical scheme, and returns a 2-tuple consisting of the filled in array and some convergence information:

.. code-block:: python
import gridfill
# Fill an array where the y-dimension is first and the x-dimension is
# second, with the x-dimension being cyclic, using a tolerance of 0.01
# (tolerance depends on your data values, choose appropriately):
filled_array, converged = gridfill.fill(masked_array, 1, 0, 0.01, cyclic=True)
If you are working with `iris.cube.Cube` objects then the convenient `gridfill.fill_cube` function is probably the tool for the job:

.. code-block:: python
import gridfill
# With a Cube as input we don't need to give dimension numbers:
filled_cube = gridfill.fill_cube(cube_with_missing, 0.01, cyclic=True)
Development and Contributing
----------------------------

Development is done through Github_.
Bug reports and feature requests should be made using the repository issues_ page.
Pull requests for new features and bug fixes are welcome!


.. _numpy: https://numpy.org
.. _iris: https://scitools-iris.readthedocs.io/en/stable/
.. _conda: https://docs.conda.io/en/latest/
.. _setuptools: https://setuptools.pypa.io/en/latest/
.. _cython: https://cython.org
.. _Github: https://github.com/ajdawson/gridfill
.. _issues: https://github.com/ajdawson/gridfill/issues
134 changes: 134 additions & 0 deletions _static/_sphinx_javascript_frameworks_compat.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,134 @@
/*
* _sphinx_javascript_frameworks_compat.js
* ~~~~~~~~~~
*
* Compatability shim for jQuery and underscores.js.
*
* WILL BE REMOVED IN Sphinx 6.0
* xref RemovedInSphinx60Warning
*
*/

/**
* select a different prefix for underscore
*/
$u = _.noConflict();


/**
* small helper function to urldecode strings
*
* See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
*/
jQuery.urldecode = function(x) {
if (!x) {
return x
}
return decodeURIComponent(x.replace(/\+/g, ' '));
};

/**
* small helper function to urlencode strings
*/
jQuery.urlencode = encodeURIComponent;

/**
* This function returns the parsed url parameters of the
* current request. Multiple values per key are supported,
* it will always return arrays of strings for the value parts.
*/
jQuery.getQueryParameters = function(s) {
if (typeof s === 'undefined')
s = document.location.search;
var parts = s.substr(s.indexOf('?') + 1).split('&');
var result = {};
for (var i = 0; i < parts.length; i++) {
var tmp = parts[i].split('=', 2);
var key = jQuery.urldecode(tmp[0]);
var value = jQuery.urldecode(tmp[1]);
if (key in result)
result[key].push(value);
else
result[key] = [value];
}
return result;
};

/**
* highlight a given string on a jquery object by wrapping it in
* span elements with the given class name.
*/
jQuery.fn.highlightText = function(text, className) {
function highlight(node, addItems) {
if (node.nodeType === 3) {
var val = node.nodeValue;
var pos = val.toLowerCase().indexOf(text);
if (pos >= 0 &&
!jQuery(node.parentNode).hasClass(className) &&
!jQuery(node.parentNode).hasClass("nohighlight")) {
var span;
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
if (isInSVG) {
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
} else {
span = document.createElement("span");
span.className = className;
}
span.appendChild(document.createTextNode(val.substr(pos, text.length)));
node.parentNode.insertBefore(span, node.parentNode.insertBefore(
document.createTextNode(val.substr(pos + text.length)),
node.nextSibling));
node.nodeValue = val.substr(0, pos);
if (isInSVG) {
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
var bbox = node.parentElement.getBBox();
rect.x.baseVal.value = bbox.x;
rect.y.baseVal.value = bbox.y;
rect.width.baseVal.value = bbox.width;
rect.height.baseVal.value = bbox.height;
rect.setAttribute('class', className);
addItems.push({
"parent": node.parentNode,
"target": rect});
}
}
}
else if (!jQuery(node).is("button, select, textarea")) {
jQuery.each(node.childNodes, function() {
highlight(this, addItems);
});
}
}
var addItems = [];
var result = this.each(function() {
highlight(this, addItems);
});
for (var i = 0; i < addItems.length; ++i) {
jQuery(addItems[i].parent).before(addItems[i].target);
}
return result;
};

/*
* backward compatibility for jQuery.browser
* This will be supported until firefox bug is fixed.
*/
if (!jQuery.browser) {
jQuery.uaMatch = function(ua) {
ua = ua.toLowerCase();

var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
/(webkit)[ \/]([\w.]+)/.exec(ua) ||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
/(msie) ([\w.]+)/.exec(ua) ||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
[];

return {
browser: match[ 1 ] || "",
version: match[ 2 ] || "0"
};
};
jQuery.browser = {};
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
}
Loading

0 comments on commit d2c05e2

Please sign in to comment.