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Assessment notebook for December workshop #97

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Assessment notebook for December workshop #97

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7dd6114
Renaming file for better accuracy
RuthBowyer Aug 15, 2023
6d8875b
Renaming file for clarity
RuthBowyer Aug 15, 2023
e9f7a85
Updating func and appling BC qmapQuant to three cities
RuthBowyer Aug 15, 2023
687eb12
Moving some files to new folder
RuthBowyer Aug 24, 2023
05ad4c9
Script updates for grouping etc
RuthBowyer Aug 24, 2023
1695c31
Correcting precip error in Hads read in
RuthBowyer Aug 25, 2023
ad2845b
Correcting precip error in Hads read in
RuthBowyer Aug 25, 2023
17cca21
Merge branch 'LCAT.data' of https://github.com/alan-turing-institute/…
RuthBowyer Aug 29, 2023
b77383f
Updating fnc for scotland
RuthBowyer Aug 29, 2023
0c828f7
Updating fnc for scotland
RuthBowyer Aug 29, 2023
fd5642b
Start the BC for LCAT
RuthBowyer Aug 31, 2023
470fb08
Including fnc for Scotland
RuthBowyer Sep 5, 2023
dff994f
Deriving seasonal means
RuthBowyer Sep 5, 2023
c15beab
Loading obs data
RuthBowyer Sep 7, 2023
89df88e
Simplifying code - this might be a conflict later though
RuthBowyer Sep 7, 2023
b195855
Adding metrics, sorting out fig generation
RuthBowyer Sep 12, 2023
4e8be76
Adding in all runs rather than one and extracting rasters for general…
RuthBowyer Sep 12, 2023
049e749
Adding loops to deal with the four runs simultaneously
RuthBowyer Sep 12, 2023
5791e97
Updating with more figs
RuthBowyer Sep 15, 2023
bd9d793
conversion of val dfs to run over all runs
RuthBowyer Sep 19, 2023
894efea
update read_crop.fn.R - this could have been pushed already?
RuthBowyer Sep 19, 2023
68d7aca
Added density plot, rmse for each run
RuthBowyer Sep 21, 2023
282a75e
Cleaning up files for LCAT
RuthBowyer Sep 22, 2023
f90ac12
Updates for R pipeline
RuthBowyer Sep 22, 2023
be16f8f
Adding pre-processing to within method (qmap in this eg)
RuthBowyer Sep 26, 2023
879e608
Sep'ing script for conversion to df
RuthBowyer Sep 26, 2023
44175ac
updating for easier R pipeline
RuthBowyer Sep 28, 2023
4ca30d4
Update to script to convert city crops to data frame
RuthBowyer Sep 28, 2023
580d36f
Add notes and fixing function
RuthBowyer Sep 29, 2023
2e6fa1d
Small updated to wet.day and corrected related issue preventing run
RuthBowyer Oct 3, 2023
8678c07
Rewriting BC assessment to be more general for input
RuthBowyer Oct 4, 2023
70c4bb0
Resaving to avoid confusion
RuthBowyer Oct 4, 2023
2b90ca0
Sorting out raster plotting
RuthBowyer Oct 8, 2023
972502d
Updating metrics so as to work with new data format
RuthBowyer Oct 9, 2023
ad8851f
tidy markdown add kable
RuthBowyer Oct 9, 2023
cf7be9f
merge: attempt fixing `main` and `Update.Rpipeline` merge conflict
spool Nov 22, 2023
6049fca
fix(ci): add `pre-commit` to check `R/` path and apply
spool Nov 22, 2023
a704f7c
feat: add `notebooks/Assessing_bc_Data_local-mac.rmd`
spool Nov 22, 2023
30ab294
fix(ci): apply `pre-commit` change to remainder of `R/`
spool Nov 23, 2023
0de11c3
feat: add `notebooks/Assessing_bc_Data/Assessing_BC-Data-workshop.RMD`
spool Dec 6, 2023
4ddee59
feat(refactor): comment out `python` vs `R` loading options in `Asses…
spool Dec 6, 2023
4e8f1d0
refactor(debias): add `debias_wrapper.py` for potential new python re…
spool Dec 9, 2023
7bd7787
feat: add `RuthUpdates...Rmd` notebook
spool Dec 9, 2023
fc63a17
fix(ci): merge `main` `CI` changes
spool Dec 10, 2023
eea965f
Merge remote-tracking branch 'origin/workshop-python-rerun' into ruth…
spool Dec 10, 2023
55ecdf8
Automate installation of packages
gmingas Dec 10, 2023
eec0e56
Minor modifications in install and import order
gmingas Dec 10, 2023
ad405cf
Remove duplicate library call
gmingas Dec 10, 2023
98f03cb
Adding in the index to look up
RuthBowyer Dec 10, 2023
f7a2803
Recommit installation cell that was overwritten
gmingas Dec 10, 2023
3b141c7
Final notebook that knits
RuthBowyer Dec 10, 2023
76048fd
adding html rendered notebook
RuthBowyer Dec 10, 2023
f0de8eb
small change to format
RuthBowyer Dec 10, 2023
42d8d23
feat: add `rstudio` docker deploy and `python.utils.make_user`
spool Dec 11, 2023
50e8d1f
Merge remote-tracking branch 'origin/ruth-notebook-for-workshop' into…
spool Dec 11, 2023
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6 changes: 6 additions & 0 deletions .dockerignore
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Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
README_files
_reference
_sidebar*
_site*
_extensions
*.bak
5 changes: 2 additions & 3 deletions .github/workflows/ci.yaml
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Expand Up @@ -15,12 +15,11 @@ env:

on:
pull_request:
branches: ['main', 'doc-deploy']
branches: ['main', 'doc-deploy', 'ruth-notebook-for-workshop']
paths-ignore: ['docs/**']

push:
branches: ['main', 'doc-deploy']
paths-ignore: ['docs/**']
branches: ['main', 'doc-deploy', 'ruth-doc-deploy']

concurrency:
group: ${{ github.head_ref || github.run_id }}
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
exclude: "R|data"
exclude: "data"
repos:
- repo: https://github.com/psf/black
rev: "23.9.1"
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