Redoc

alanocallaghan · Jan 28, 2024 · 2fb24ec · 2fb24ec
1 parent fc2e48e
commit 2fb24ec
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Showing 3 changed files with 34 additions and 8 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -66,6 +66,6 @@ biocViews: ImmunoOncology, SingleCell, RNASeq, QualityControl, Preprocessing, No
         GeneExpression, Sequencing, Software, DataImport,
         DataRepresentation, Infrastructure, Coverage
 Encoding: UTF-8
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 URL: http://bioconductor.org/packages/scater/
 BugReports: https://support.bioconductor.org/
diff --git a/NAMESPACE b/NAMESPACE
@@ -212,9 +212,35 @@ importFrom(ggrepel,geom_text_repel)
 importFrom(methods,as)
 importFrom(rlang,as_label)
 importFrom(scuttle,.bpNotSharedOrUp)
+importFrom(scuttle,addPerCellQC)
+importFrom(scuttle,addPerFeatureQC)
+importFrom(scuttle,aggregateAcrossCells)
+importFrom(scuttle,aggregateAcrossFeatures)
+importFrom(scuttle,calculateAverage)
+importFrom(scuttle,calculateCPM)
+importFrom(scuttle,calculateFPKM)
+importFrom(scuttle,calculateTPM)
+importFrom(scuttle,computeLibraryFactors)
+importFrom(scuttle,computeMedianFactors)
 importFrom(scuttle,fitLinearModel)
+importFrom(scuttle,isOutlier)
+importFrom(scuttle,librarySizeFactors)
+importFrom(scuttle,logNormCounts)
+importFrom(scuttle,makePerCellDF)
+importFrom(scuttle,makePerFeatureDF)
+importFrom(scuttle,medianSizeFactors)
+importFrom(scuttle,mockSCE)
+importFrom(scuttle,normalizeCounts)
+importFrom(scuttle,numDetectedAcrossCells)
+importFrom(scuttle,numDetectedAcrossFeatures)
 importFrom(scuttle,perCellQCMetrics)
+importFrom(scuttle,perFeatureQCMetrics)
+importFrom(scuttle,quickPerCellQC)
+importFrom(scuttle,readSparseCounts)
+importFrom(scuttle,sumCountsAcrossCells)
+importFrom(scuttle,sumCountsAcrossFeatures)
 importFrom(scuttle,summarizeAssayByGroup)
+importFrom(scuttle,uniquifyFeatureNames)
 importFrom(stats,cmdscale)
 importFrom(stats,dist)
 importFrom(stats,median)

diff --git a/man/plot_reddim.Rd b/man/plot_reddim.Rd