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update to point to Front in Immunology paper
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- citation and DOI are available, while being typeset
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alexlancaster committed Mar 9, 2024
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19 changes: 11 additions & 8 deletions README.rst
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Expand Up @@ -17,14 +17,17 @@ available in the `PyPop User Guide <http://pypop.org/docs>`__.
If you write a paper that uses PyPop in your analysis, please cite
**both**:

* our 2024 article, currently in review, available as a `Zenodo
preprint <https://doi.org/10.5281/zenodo.10602940>`__:

Lancaster AK, Single RM, Mack SJ, Sochat V, Mariani MP, Webster
GD. (2024) "PyPop: A mature open-source software pipeline for
population genomics" (Preprint v1). Zenodo.
DOI:`10.5281/zenodo.10602940
<https://doi.org/10.5281/zenodo.10602940>`__.
* our 2024 article, `provisionally accepted
<https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2024.1378512/abstract>`__
in *Frontiers in Immunology*:

Lancaster AK, Single RM, Mack SJ, Mariani MP. (2024) "PyPop: A
mature open-source software pipeline for population genomics."
*Front Immunol* **15**: doi: `10.3389/fimmu.2024.1378512
<https://doi.org/10.3389/fimmu.2024.1378512>`__

(while it is being typeset, the accepted manuscript can be
downloaded via `Zenodo <https://doi.org/10.5281/zenodo.10799312>`__)

* **and** the `Zenodo record <https://zenodo.org/records/10080667>`__
for the software. To cite the correct version, follow these steps:
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8 changes: 6 additions & 2 deletions website/index.rst
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Expand Up @@ -23,7 +23,11 @@ large-scale population genetic analyses including:
.. admonition:: PyPop News
:class: dropdown, toggle-shown



* 2024-03-08: Latest PyPop paper, `provisionally accepted
<https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2024.1378512/abstract>`__
in *Frontiers in Immunology*, :ref:`see citing PyPop
<citing-pypop>` for details.
* 2024-02-24: `PyPop 1.0.2
<https://github.com/alexlancaster/pypop/releases/tag/v1.0.2>`__
released and available on `PyPI
Expand Down Expand Up @@ -101,7 +105,7 @@ Although it can be run on any kind of genotype data, it has additional
support for analyzing population genotype with allelic nomenclature
from the human leukocyte antigen (HLA) region.

An outline of PyPop can be found in our 2024 preprint, and two
An outline of PyPop can be found in our 2024 paper, and two
previous :ref:`papers <citing-pypop>`.

.. _guide-preface-2-end:
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