Merge remote-tracking branch 'origin/main' into cff_to_zenodo

.github/workflows/build_wheels.yml

@@ -206,7 +206,7 @@ jobs:
         with:
           platforms: all
       - name: Install a recent stable Python to handle Python deps
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: 3.12
       - name: Query version with setuptools_scm

.zenodo.json

@@ -168,13 +168,13 @@
     },
     {
       "scheme": "url",
-      "identifier": "https://github.com/alexlancaster/pypop/tree/v1.1.1",
+      "identifier": "https://github.com/alexlancaster/pypop/tree/v1.1.2",
       "relation": "isSupplementTo",
       "resource_type": "software"
     },
     {
       "scheme": "url",
-      "identifier": "https://pypi.org/project/pypop-genomics/1.1.1",
+      "identifier": "https://pypi.org/project/pypop-genomics/1.1.2",
       "relation": "isSourceOf",
       "resource_type": "software"
     },
@@ -213,5 +213,5 @@
   ],
   "title": "PyPop: Python for Population Genomics",
   "upload_type": "software",
-  "version": "v1.1.1"
+  "version": "v1.1.2"
 }

CITATION.cff

@@ -114,8 +114,8 @@ identifiers:
     relation: IsVersionOf
 type: software
 license: GPL-2.0-or-later
-version: v1.1.1
-doi: 10.5281/zenodo.13742984
+version: v1.1.2
+doi: 10.5281/zenodo.14182367
 keywords:
   - population genetics
   - population genomics

NEWS.md

@@ -7,6 +7,30 @@ concatenated release notes.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org).
 
+## [1.1.2] - 2024-11-18
+
+### Features
+
+- Add new command-line option `--citation` for installed version by @alexlancaster ([#228](https://github.com/alexlancaster/pypop/pull/228))
+- enable PyPy 3.10 as numpy wheels now exist by @alexlancaster ([#219](https://github.com/alexlancaster/pypop/pull/219))
+
+### Internal
+
+- Update numpy requirement from \<=2.1.2 to \<=2.1.3 by @dependabot ([#226](https://github.com/alexlancaster/pypop/pull/226))
+- update x86 runner to `macos-13`, pin `swig` version by @alexlancaster ([#227](https://github.com/alexlancaster/pypop/pull/227))
+- Bump pypa/cibuildwheel from 2.21.2 to 2.21.3 in the actions group by @dependabot ([#225](https://github.com/alexlancaster/pypop/pull/225))
+- Bump pypa/cibuildwheel from 2.21.1 to 2.21.2 in the actions group by @dependabot ([#224](https://github.com/alexlancaster/pypop/pull/224))
+- Update numpy requirement from \<=2.1.1 to \<=2.1.2 by @dependabot ([#223](https://github.com/alexlancaster/pypop/pull/223))
+- Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 in the actions group across 1 directory by @dependabot ([#222](https://github.com/alexlancaster/pypop/pull/222))
+
+### Documentation
+
+- Add new command-line option `--citation` for installed version by @alexlancaster ([#228](https://github.com/alexlancaster/pypop/pull/228))
+- Update to latest `sphinx` and add subtitle by @alexlancaster ([#220](https://github.com/alexlancaster/pypop/pull/220))
+
+[1.1.2]: https://github.com/alexlancaster/pypop/releases/tag/v1.1.2
+
+
 ## [1.1.1] - 2024-09-10
 
 ### Features

website/index.rst

@@ -23,12 +23,18 @@ large-scale population genetic analyses including:
 .. admonition:: PyPop News
   :class: dropdown, toggle-shown
 
-  * 2024-09-10: `PyPop 1.1.1
-    <https://github.com/alexlancaster/pypop/releases/tag/v1.1.1>`__
+  * 2024-11-18: `PyPop 1.1.2
+    <https://github.com/alexlancaster/pypop/releases/tag/v1.1.2>`__
     released and available on `PyPI
     <https://pypi.org/project/pypop-genomics/>`__.
 
-    - Enable support for Python 3.13 and build Python 3.13 wheels
+    - Add ``--citation`` command-line option to print citation
+      information for the installed release.
+    - ``numpy`` dependency update to 2.1.3
+
+  * 2024-09-10: `PyPop 1.1.1
+    <https://github.com/alexlancaster/pypop/releases/tag/v1.1.1>`__
+    released, enables support for Python 3.13 and build Python 3.13 wheels.
 
   * 2024-05-30: `PyPop 1.1.0
     <https://github.com/alexlancaster/pypop/releases/tag/v1.1.0>`__
@@ -43,18 +49,12 @@ large-scale population genetic analyses including:
   * 2024-03-08: PyPop paper, provisionally accepted.
   * 2024-02-24: `PyPop 1.0.2
     <https://github.com/alexlancaster/pypop/releases/tag/v1.0.2>`__
-    released.
-
-    - Cleanups as a result of code scanning.
-    - Update ``numpy`` to 1.26.4
+    released. Code scanning updates and updated ``numpy`` to 1.26.4
 
   * 2024-02-11: `PyPop 1.0.1
     <https://github.com/alexlancaster/pypop/releases/tag/v1.0.1>`__
-    released.
-
-    - Adds support for more platforms: ``ARM64`` for Windows and Linux,
-      and also ``muslinux`` wheels
-    - Better support for scientific notation in text output
+    released. Added support for ``ARM64`` for Windows and Linux, and
+    also ``muslinux`` wheels. Improved support for scientific notation.
 
   * 2024-02-01: `Preprint <https://zenodo.org/records/10602940>`__
     describing 1.0.0 released on Zenodo.