Update Sylvain

01-SampleSize.qmd

@@ -1,3 +1,3 @@
 # Sample size
 
-This section covers examples related to the topic of sample size.
+This section covers specific the examples related to the topic of 'sample size'.

01-SampleSize_Bayesian_power_basics_examples.qmd

@@ -0,0 +1,75 @@
+# External resources and references
+
+## Peer-reviewed articles 
+
+
+- A Review of Bayesian Perspectives on Sample Size Derivation for Confirmatory Trials (2021). \
+<https://pubmed.ncbi.nlm.nih.gov/34992303/>
+
+- Bayesian sample size determination for diagnostic accuracy studies (2022). \
+<https://onlinelibrary.wiley.com/doi/10.1002/sim.9393>
+
+- Bayesian estimation supersedes the t test (2013). \
+<https://psycnet.apa.org/doiLanding?doi=10.1037%2Fa0029146>
+
+- The Bayesian New Statistics: Hypothesis testing, estimation, meta-analysis, and power analysis from a Bayesian perspective (2017)
+<https://link.springer.com/article/10.3758/s13423-016-1221-4>
+
+- Bayesian and mixed bayesian/likelihood criteria for sample size determination 
+<https://onlinelibrary.wiley.com/doi/10.1002/(SICI)1097-0258(19970415)16:7%3C769::AID-SIM495%3E3.0.CO;2-V>
+
+
+
+## Blog posts
+
+- Introduction to bayesian clinical trial designs (detailed - including R code examples)\
+<https://hbiostat.org/bayes/bet/design>
+
+
+- Introduction to bayesian sample size calculation (including R code example)
+<https://www.rdatagen.net/post/2021-06-01-bayesian-power-analysis/>
+
+
+- Introduction to bayesian "power" and comparison with frequentist approaches (including R code example):\
+<https://solomonkurz.netlify.app/blog/bayesian-power-analysis-part-i/>
+<https://solomonkurz.netlify.app/blog/bayesian-power-analysis-part-ii/>
+
+- Brief introduction to bayesian power - including comparison with frequentist terms:\
+<https://anatomisebiostats.com/biostatistics-blog/bayesian-sample-size-estimation-in-clinical-study-design-rtcs/>
+
+- Stopping rules using bayesian analyses
+<https://statmodeling.stat.columbia.edu/2014/02/13/stopping-rules-bayesian-analysis/>
+<http://varianceexplained.org/r/bayesian-ab-testing/>
+
+
+## R packages and online tools
+
+- **Package ‘SampleSizeProportions’ (2023)** \
+Calculating Sample Size Requirements when Estimating the Difference Between Two Binomial Proportions
+<https://cran.rstudio.com/web/packages/SampleSizeProportions/index.html>
+
+- **Package ‘BayesPPD’ (2021)** \
+Bayesian sample size determination using the power and normalized power prior for generalized linear models
+<https://rdrr.io/cran/BayesPPD/man/BayesPPD-package.html>
+
+- **Package ‘BayesPPDSurv’ (2024)** \
+Bayesian power/type I error calculation and model fitting using the power prior and the normalized power prior for proportional hazards models with piecewise constant hazard. <https://cran.r-project.org/web/packages/BayesPPDSurv/index.html>
+
+- **Package ‘BayesCTDesign’ (2021)** \
+Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data
+<https://cran.r-project.org/web/packages/BayesCTDesign/index.html>
+
+- **Package ‘BayesFactor’ (2024)** \
+A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
+<https://cran.r-project.org/web/packages/BayesFactor/index.html>
+
+- **trialdesign.org** \
+An online resource platform for several phase-I and phase-II designs.
+<https://www.trialdesign.org>
+
+## Author {-}
+
+Sylvain Losdat, PhD\
+Department of Clinical Research\
+University of Bern\
+3012 Bern, Switzerland

_quarto.yml

@@ -15,6 +15,7 @@ book:
       chapters:	
         - 01-SampleSize-BinaryOutcome.qmd
         - 01-SampleSize-ContinuousOutcome.qmd
+        - 01-SampleSize_Bayesian_power_basics_examples.qmd
     - references.qmd
 
 format:

docs/01-SampleSize.html

@@ -123,6 +123,12 @@ <h1 class="title">Sample size</h1>
   <a href="./01-SampleSize-ContinuousOutcome.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">Two-arm study with a continuous primary outcome</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./01-SampleSize_Bayesian_power_basics_examples.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">3</span>&nbsp; <span class="chapter-title">External resources and references</span></span></a>
+  </div>
 </li>
       </ul>
   </li>
@@ -147,7 +153,7 @@ <h1 class="title">Sample size</h1>
 
 
 
-<p>This section covers examples related to the topic of sample size.</p>
+<p>This section covers specific the examples of the topic of ‘sample size’.</p>