[DA-3884] Update retention calculations

[pegbertsch]

Resolves DA-3884

Description of changes/additions

New NIH guidance on retention calculations: count any PrimaryConsentUpdate response (not just "yes" responses) as an active retention activity, do not credit EHR consent completion for retention eligibility until EHR PDF is successfully validated, and no longer planning to include NPH module 1-3 "no" consents (or opt-ins) as active retention activities.

Corner cases still exist (see DA-3966) for linking a validated EHR PDF to its correct questionnaire_response_id, so the validation check can still be overridden via the retention tool to correct some edge cases if needed. Other cases found were addressed by tweaking the PDR generator for determining the correct questionnaire_response_id to mark SUBMITTED, so PTSC calculations can match RDR's.

Updating the MySQL client to resolve issues running unit tests locally.

Tests

Manual testing of recalculated retention values via the tool (no updates saved to the database) based on known mismatches in production data to confirm PTSC and RDR values will match when the new logic is applied.

[pegbertsch]

Placing on hold pending outcome of a follow-up meeting with NIH regarding complexities of limiting eligibility to participants with a validated EHR consent PDF (vs. just confirming a "yes" response was received)