jupyterlab-bioinformatics

Jupyter notebooks for introductory level bioinformatics.

Chapters from "Biopython Tutorial and Cookbook" are partially carried here as jupyter notebook.

files folder contains example files from biopython/biopython repo

Name	Name	Last commit message	Last commit date
Latest commit alperyilmaz couldnt download ipynb for some reason.. uploaded md copy.. Mar 25, 2019 ac4a83d · Mar 25, 2019 History 30 Commits
binder	binder	trying to add gatk folder to bashrc	Mar 25, 2019
external_files	external_files	got networkx for biogrid working	Feb 19, 2019
files	files	file indexing in chp4-5 and add chp7	Dec 21, 2018
genome	genome	added ngs intro and human tiny genome	Mar 18, 2019
.gitignore	.gitignore	initial commit	Sep 27, 2018
.profile	.profile	initial commit	Sep 27, 2018
01pubmed.ipynb	01pubmed.ipynb	added msa chapter and example files	Nov 2, 2018
README.md	README.md	Update README.md	Nov 2, 2018
chp3-seq-objects.ipynb	chp3-seq-objects.ipynb	added msa chapter and example files	Nov 2, 2018
chp4-5-seq-feature.ipynb	chp4-5-seq-feature.ipynb	file indexing in chp4-5 and add chp7	Dec 21, 2018
chp6-msa.ipynb	chp6-msa.ipynb	added msa chapter and example files	Nov 2, 2018
chp7-blast.ipynb	chp7-blast.ipynb	update chp7	Dec 21, 2018
chp9-entrez.ipynb	chp9-entrez.ipynb	chp9 more	Jan 4, 2019
index.ipynb	index.ipynb	added pubmed example	Sep 27, 2018
ngs-intro-copy.md	ngs-intro-copy.md	couldnt download ipynb for some reason.. uploaded md copy..	Mar 25, 2019
ngs-intro.ipynb	ngs-intro.ipynb	added ngs intro and human tiny genome	Mar 18, 2019
reproduce01.ipynb	reproduce01.ipynb	got networkx for biogrid working	Feb 19, 2019

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