v3.0.0-alpha1

Added

• MetagenomicBins collection to store a dense array of MetagenomicBin objects.
• metagenomic_bins keyword argument to GeneFinder allowing to control which models are used when running gene finding in meta mode (#24).
• metagenomic_bin attribute to Genes referencing the metagenomic model with which the genes were predicted, if in meta mode.
• Additional TrainingInfo properties (missing_motif_weight, coding_statistics).
• Setters for all remaining TrainingInfo properties.
• Proper TrainingInfo constructor with configuration option for all attributes.
• TrainingInfo.to_dict method to extract all parameters from a TrainingInfo.

Changed

• BREAKING: Rename OrfFinder to GeneFinder for consistency.
• Reorganize memory management of the built-in metagenomic models.
• Make the internal Cython model public (pyrodigal.lib) to allow importing the underlying classes in other Cython projects.
• BREAKING: Use memoryview to expose all TrainingInfo attributes instead manually building lists or tuples.

Removed

• BREAKING: metagenomic_bin attribute of TrainingInfo.