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Clarification of new ivar consensus -c (minimum insertion frequency) parameter #149

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wm75 opened this issue Feb 13, 2023 · 0 comments
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wm75 commented Feb 13, 2023

The command line help for this param currently reads:
-c Minimum insertion frequency threshold(0 - 1) to call consensus.
and miminum_insertion_frequency is also the internal name used for the supplied value, but looking at the code it seems that this is actually treated like a minimum_indel_frequency, which also seems like the expected behavior for such an option?
So should the help message get adjusted and the internal variable be renamed?

@cmaceves cmaceves self-assigned this Feb 15, 2023
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