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REF_AA not consistent with actual AA at the position from reference protein fasta file
#172
opened Jan 16, 2024 by
Shawn-X-Zhang
Clarification of new ivar consensus -c (minimum insertion frequency) parameter
#149
opened Feb 13, 2023 by
wm75
ivar consensus: call reference at positions with low coverage
enhancement
New feature or request
#131
opened Jun 23, 2022 by
alephreish
Allow different thresholds for insertions and SNVs
enhancement
New feature or request
#114
opened Jan 7, 2022 by
bwlang
How does ivar handle samtools mpileup output for overlapping Paired-End Reads?
#113
opened Dec 13, 2021 by
ggrimes
ivar variants: reducing q-score threshold results in high P-value for deletion
#96
opened Apr 22, 2021 by
pmenzel
ivar calls three nucleotide changes instead of just one complete codon change
enhancement
New feature or request
#92
opened Mar 23, 2021 by
saramonzon
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