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Added integration test workflow
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andreped committed Sep 11, 2024
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name: Integration test

on:
push:
branches: 'main'
pull_request:
branches: 'main'
workflow_dispatch:

jobs:
build:
runs-on: ubuntu-20.04
steps:
- name: Checkout repo
uses: actions/checkout@v1

- name: Set up Python 3.6
uses: actions/setup-python@v2
with:
python-version: '3.6'

- name: Install dependencies
run: pip install wheel setuptools

- name: Build package
run: python setup.py bdist_wheel

- name: Upload Python wheel
uses: actions/upload-artifact@v3
with:
name: "Python wheel"
path: ./dist/*
if-no-files-found: error

integration-tests:
needs: build
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [macos-latest]
python: ["3.10"]
steps:
- name: Checkout repo
uses: actions/checkout@v1

- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}

- name: Install dependencies
run: pip install wheel setuptools

- name: Download artifact
uses: actions/download-artifact@v3
with:
name: "Python wheel"

- name: Install wheel
run: pip install --find-links=. vsi2tif-*
shell: bash

- name: Install vips
run: |
brew install --cask zulu@8
brew install vips
- name: Install bftools
run: |
wget http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip
unzip bftools.zip
- name: Download test data
run: |
wget https://openslide.cs.cmu.edu/download/openslide-testdata/Olympus/OS-2.zip
unzip OS-2.zip
- name: Test single conversion
run: vsi2tif -i ./OS-2.vsi -o ./OS-2.tif -b bftools/bfconvert -v 0
shell: bash

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