report

angelovangel · Jul 20, 2024 · d4fb5a8 · d4fb5a8
1 parent dac250e
commit d4fb5a8
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Showing 4 changed files with 10 additions and 6 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -12,6 +12,7 @@ importFrom(dplyr,"%>%")
 importFrom(dplyr,bind_rows)
 importFrom(dplyr,summarise)
 importFrom(htmlwidgets,JS)
+importFrom(kableExtra,kable_minimal)
 importFrom(kableExtra,kable_styling)
 importFrom(kableExtra,kbl)
 importFrom(knitr,kable)

diff --git a/R/rfaster2-package.R b/R/rfaster2-package.R
@@ -6,6 +6,7 @@
 #' @importFrom dplyr bind_rows
 #' @importFrom dplyr summarise
 #' @importFrom htmlwidgets JS
+#' @importFrom kableExtra kable_minimal
 #' @importFrom kableExtra kable_styling
 #' @importFrom kableExtra kbl
 #' @importFrom knitr kable

diff --git a/inst/report.Rmd b/inst/report.Rmd
@@ -65,7 +65,7 @@ num_bases_text <- label_number(scale_cut = cut_si(""), accuracy = 1)(num_bases)
 
 ***
 
-### Number of reads and read quality metrics
+### FASTQ read quality metrics
 The report contains 
 <blockquote>  
 **`r num_files`** fastq files  
@@ -80,9 +80,10 @@ kableExtra::kbl(
   digits = 2, caption = 'Table 1. FASTQ files statistics', 
   format.args = list(big.mark = ",")
   ) %>%
-  kable_styling(
-    fixed_thead = TRUE, bootstrap_options = c("responsive")
-  )
+  # kable_styling(
+  #   full_width = T, fixed_thead = TRUE, bootstrap_options = c("responsive")
+  # ) %>%
+  kable_minimal(lightable_options = 'hover')
 
 
 ```
@@ -118,7 +119,8 @@ table2_caption <- paste0(
 df %>%
 	#dplyr::arrange(file) %>%
 	kableExtra::kbl(escape = F, caption = table2_caption) %>%
-	kable_styling(fixed_thead = TRUE, bootstrap_options = c("responsive"))
+	#kable_styling(fixed_thead = TRUE, bootstrap_options = c("responsive"))
+  kable_minimal()
   
 ```
 

diff --git a/man/rfaster2-package.Rd b/man/rfaster2-package.Rd