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fastq_subsample_fq_salmon nf-test snapshot (#4419) #4

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fastq_subsample_fq_salmon nf-test snapshot (#4419)

fastq_subsample_fq_salmon nf-test snapshot (#4419) #4

Run time

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Job Run time
pytest-changes
1s
nf-test-changes
8s
editorconfig
1s
prettier
1s
nf-test (subworkflows/fastq_subsample_fq_salmon, docker)
1m 58s
nf-test (subworkflows/fastq_subsample_fq_salmon, singularity)
1m 59s
nf-test (subworkflows/fastq_subsample_fq_salmon, conda)
2m 39s
nf-test (subworkflows/bam_stats_samtools, docker)
2m 37s
nf-test (subworkflows/bam_stats_samtools, singularity)
2m 39s
nf-test (subworkflows/bam_stats_samtools, conda)
6m 45s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, docker)
2m 14s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, singularity)
2m 1s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, conda)
2m 24s
nf-test (subworkflows/bam_rseqc, docker)
2m 4s
nf-test (subworkflows/bam_rseqc, singularity)
2m 23s
nf-test (subworkflows/bam_rseqc, conda)
5m 38s
nf-test (subworkflows/bedgraph_bedclip_bedgraphtobigwig, docker)
1m 47s
nf-test (subworkflows/bedgraph_bedclip_bedgraphtobigwig, singularity)
2m 26s
nf-test (subworkflows/bedgraph_bedclip_bedgraphtobigwig, conda)
1m 55s
nf-test (svdb/query, docker)
2m 2s
nf-test (svdb/query, singularity)
2m 6s
nf-test (svdb/query, conda)
1m 59s
nf-test (sratools/fasterqdump, docker)
2m 48s
nf-test (sratools/fasterqdump, singularity)
2m 57s
nf-test (sratools/fasterqdump, conda)
4m 1s
nf-test (sratools/prefetch, docker)
3m 6s
nf-test (sratools/prefetch, singularity)
2m 28s
nf-test (sratools/prefetch, conda)
3m 32s
nf-test (abacas, docker)
1m 47s
nf-test (abacas, singularity)
1m 57s
nf-test (abacas, conda)
1m 48s
nf-test (nonpareil/nonpareil, docker)
2m 15s
nf-test (nonpareil/nonpareil, singularity)
2m 8s
nf-test (nonpareil/nonpareil, conda)
2m 28s
nf-test (nonpareil/set, docker)
2m 10s
nf-test (nonpareil/set, singularity)
2m 27s
nf-test (nonpareil/set, conda)
2m 22s
nf-test (nonpareil/curve, docker)
2m 14s
nf-test (nonpareil/curve, singularity)
2m 9s
nf-test (nonpareil/curve, conda)
2m 18s
nf-test (aria2, docker)
1m 47s
nf-test (aria2, singularity)
1m 50s
nf-test (aria2, conda)
1m 45s
nf-test (sortmerna, docker)
1m 53s
nf-test (sortmerna, singularity)
1m 59s
nf-test (sortmerna, conda)
2m 5s
nf-test (eklipse, docker)
3m 5s
nf-test (eklipse, singularity)
2m 45s
nf-test (eklipse, conda)
3m 19s
nf-test (subread/featurecounts, docker)
2m 5s
nf-test (subread/featurecounts, singularity)
2m 15s
nf-test (subread/featurecounts, conda)
2m 29s
nf-test (preseq/lcextrap, docker)
2m 3s
nf-test (preseq/lcextrap, singularity)
1m 59s
nf-test (preseq/lcextrap, conda)
2m 13s
nf-test (rseqc/readdistribution, docker)
2m 14s
nf-test (rseqc/readdistribution, singularity)
2m 41s
nf-test (rseqc/readdistribution, conda)
6m 5s
nf-test (rseqc/innerdistance, docker)
2m 18s
nf-test (rseqc/innerdistance, singularity)
2m 25s
nf-test (rseqc/innerdistance, conda)
6m 6s
nf-test (rseqc/readduplication, docker)
2m 6s
nf-test (rseqc/readduplication, singularity)
2m 9s
nf-test (rseqc/readduplication, conda)
6m 14s
nf-test (rseqc/junctionsaturation, docker)
2m 4s
nf-test (rseqc/junctionsaturation, singularity)
2m 19s
nf-test (rseqc/junctionsaturation, conda)
6m 6s
nf-test (rseqc/junctionannotation, docker)
2m 24s
nf-test (rseqc/junctionannotation, singularity)
2m 27s
nf-test (rseqc/junctionannotation, conda)
6m 26s
nf-test (rseqc/bamstat, docker)
2m 6s
nf-test (rseqc/bamstat, singularity)
2m 42s
nf-test (rseqc/bamstat, conda)
6m 11s
nf-test (rseqc/tin, docker)
2m 19s
nf-test (rseqc/tin, singularity)
2m 13s
nf-test (rseqc/tin, conda)
6m 16s
nf-test (rseqc/inferexperiment, docker)
2m 12s
nf-test (rseqc/inferexperiment, singularity)
2m 35s
nf-test (rseqc/inferexperiment, conda)
6m 17s
nf-test (rsem/preparereference, docker)
2m 7s
nf-test (rsem/preparereference, singularity)
2m 7s
nf-test (rsem/preparereference, conda)
2m 4s
nf-test (rsem/calculateexpression, docker)
3m 19s
nf-test (rsem/calculateexpression, singularity)
3m 36s
nf-test (rsem/calculateexpression, conda)
3m 57s
nf-test (bowtie2/build, docker)
1m 46s
nf-test (bowtie2/build, singularity)
2m 7s
nf-test (bowtie2/build, conda)
1m 57s
nf-test (bowtie2/align, docker)
3m 5s
nf-test (bowtie2/align, singularity)
3m 12s
nf-test (bowtie2/align, conda)
8m 29s
nf-test (backsub, docker)
2m 21s
nf-test (backsub, singularity)
4m 38s
nf-test (dragonflye, docker)
4m 42s
nf-test (dragonflye, singularity)
11m 19s
nf-test (dragonflye, conda)
6m 20s
nf-test (fgbio/fastqtobam, docker)
3m 16s
nf-test (fgbio/fastqtobam, singularity)
3m 55s
nf-test (fgbio/fastqtobam, conda)
5m 53s
nf-test (ucsc/bedclip, docker)
2m 9s
nf-test (ucsc/bedclip, singularity)
2m 45s
nf-test (ucsc/bedclip, conda)
2m 17s
nf-test (picard/markduplicates, docker)
2m 19s
nf-test (picard/markduplicates, singularity)
3m 13s
nf-test (picard/markduplicates, conda)
2m 50s
nf-test (diamond/blastx, docker)
2m 3s
nf-test (diamond/blastx, singularity)
2m 10s
nf-test (diamond/blastx, conda)
3m 12s
nf-test (learnmsa/align, docker)
5m 11s
nf-test (learnmsa/align, singularity)
3m 53s
nf-test (learnmsa/align, conda)
5m 30s
nf-test (kalign/align, docker)
1m 35s
nf-test (kalign/align, singularity)
1m 50s
nf-test (kalign/align, conda)
1m 54s
nf-test (multiqc, docker)
2m 32s
nf-test (multiqc, singularity)
2m 19s
nf-test (multiqc, conda)
3m 28s
nf-test (cutadapt, docker)
1m 46s
nf-test (cutadapt, singularity)
2m 10s
nf-test (cutadapt, conda)
2m 20s
nf-test (mmseqs/createdb, docker)
1m 52s
nf-test (mmseqs/createdb, singularity)
1m 57s
nf-test (mmseqs/createdb, conda)
2m 18s
nf-test (mmseqs/linclust, docker)
2m 0s
nf-test (mmseqs/linclust, singularity)
2m 3s
nf-test (mmseqs/linclust, conda)
2m 19s
nf-test (mmseqs/createindex, docker)
2m 1s
nf-test (mmseqs/createindex, singularity)
2m 7s
nf-test (mmseqs/createindex, conda)
2m 14s
nf-test (salmon/index, docker)
2m 5s
nf-test (salmon/index, singularity)
2m 17s
nf-test (salmon/index, conda)
3m 4s
nf-test (salmon/quant, docker)
2m 34s
nf-test (salmon/quant, singularity)
2m 30s
nf-test (salmon/quant, conda)
4m 26s
nf-test (clustalo/guidetree, docker)
2m 9s
nf-test (clustalo/guidetree, singularity)
2m 0s
nf-test (clustalo/guidetree, conda)
1m 59s
nf-test (bcftools/reheader, docker)
2m 30s
nf-test (bcftools/reheader, singularity)
2m 30s
nf-test (bcftools/reheader, conda)
3m 13s
nf-test (gatk4/haplotypecaller, docker)
2m 36s
nf-test (gatk4/haplotypecaller, singularity)
2m 35s
nf-test (gatk4/haplotypecaller, conda)
4m 0s
nf-test (mafft, docker)
2m 27s
nf-test (mafft, singularity)
2m 35s
nf-test (mafft, conda)
3m 49s
nf-test (krakenuniq/preloadedkrakenuniq, docker)
2m 3s
nf-test (krakenuniq/preloadedkrakenuniq, singularity)
1m 56s
nf-test (krakenuniq/preloadedkrakenuniq, conda)
2m 9s
nf-test (tcoffee/align, docker)
2m 44s
nf-test (tcoffee/align, singularity)
2m 14s
nf-test (tcoffee/align, conda)
4m 46s
nf-test (tcoffee/seqreformat, docker)
2m 31s
nf-test (tcoffee/seqreformat, singularity)
2m 22s
nf-test (tcoffee/seqreformat, conda)
3m 4s
nf-test (kraken2/kraken2, docker)
1m 55s
nf-test (kraken2/kraken2, singularity)
2m 18s
nf-test (kraken2/kraken2, conda)
3m 36s
nf-test (stringtie/merge, docker)
1m 56s
nf-test (stringtie/merge, singularity)
2m 55s
nf-test (stringtie/merge, conda)
2m 45s
nf-test (stringtie/stringtie, docker)
1m 57s
nf-test (stringtie/stringtie, singularity)
2m 13s
nf-test (stringtie/stringtie, conda)
3m 25s
nf-test (mosdepth, docker)
3m 2s
nf-test (mosdepth, singularity)
2m 58s
nf-test (mosdepth, conda)
3m 54s
nf-test (star/genomegenerate, docker)
1m 48s
nf-test (star/genomegenerate, singularity)
1m 57s
nf-test (star/genomegenerate, conda)
1m 46s
nf-test (star/align, docker)
9m 32s
nf-test (star/align, singularity)
9m 16s
nf-test (star/align, conda)
10m 52s
nf-test (amplify/predict, docker)
2m 44s
nf-test (amplify/predict, singularity)
2m 29s
nf-test (amplify/predict, conda)
4m 57s
nf-core-lint
0s
pytest
0s
confirm-pass
0s
8h 40m 59s