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@aomlomics

AOML 'Omics

Official GitHub organization of the AOML 'Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).

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  1. tourmaline tourmaline Public

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    Python 42 18

  2. mitohelper mitohelper Public

    Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

    Python 17 8

  3. tutorials tutorials Public

    Tutorials for data science and bioinformatics

    Jupyter Notebook 8 5

  4. labelmaker labelmaker Public

    Printable QR labels for samples

    Python 7 8

  5. omics-data-management omics-data-management Public

    Previous guide to omics data management, including NOAA Omics Data Management Plan.

    7 1

  6. edna2obis edna2obis Public

    Forked from iobis/dataset-edna

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    Jupyter Notebook 4 1

Repositories

Showing 10 of 19 repositories
  • protocols Public

    Protocols used by AOML Omics labs, following the BeBOP-OBON standard

    aomlomics/protocols’s past year of commit activity
    0 1 6 0 Updated Jul 9, 2024
  • tourmaline Public

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    aomlomics/tourmaline’s past year of commit activity
    Python 42 BSD-3-Clause 18 31 0 Updated Jul 3, 2024
  • opal Public
    aomlomics/opal’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 21, 2024
  • labelmaker Public

    Printable QR labels for samples

    aomlomics/labelmaker’s past year of commit activity
    Python 7 8 2 1 Updated Jun 19, 2024
  • mitohelper Public

    Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

    aomlomics/mitohelper’s past year of commit activity
    Python 17 8 0 0 Updated Jun 5, 2024
  • sase Public
    aomlomics/sase’s past year of commit activity
    C++ 0 CC-BY-4.0 0 0 0 Updated May 8, 2024
  • tutorials Public

    Tutorials for data science and bioinformatics

    aomlomics/tutorials’s past year of commit activity
    Jupyter Notebook 8 BSD-3-Clause 5 1 0 Updated May 3, 2024
  • edna2obis Public Forked from iobis/dataset-edna

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    aomlomics/edna2obis’s past year of commit activity
    Jupyter Notebook 4 MIT 3 4 0 Updated Apr 29, 2024
  • gomecc Public
    aomlomics/gomecc’s past year of commit activity
    R 0 0 0 0 Updated Apr 19, 2024
  • amethyst Public

    Metagenomics analysis workflow

    aomlomics/amethyst’s past year of commit activity
    Python 1 4 1 0 Updated Mar 11, 2024
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