Drop codecov #56
Workflow file for this run
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| name: Tests and Linting | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| jobs: | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| - name: Set PY variable | |
| run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Install pre-commit | |
| run: | | |
| pip install pre-commit | |
| pre-commit install | |
| - name: Run pre-commit | |
| run: SKIP=no-commit-to-branch pre-commit run --all-files | |
| Pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache downloaded resources | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.data/ | |
| key: resources | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install -e '.[dev]' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: python -m pytest --cov foldedtensor --cov-report xml --ignore tests/test_docs.py | |
| if: matrix.python-version != '3.9' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| run: coverage run -m pytest | |
| - name: Upload coverage data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-data-${{ matrix.python-version }} | |
| path: .coverage.* | |
| if-no-files-found: ignore | |
| Coverage: | |
| name: Combine & check coverage | |
| if: always() | |
| needs: Pytest | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PR_NUMBER: ${{github.event.pull_request.number}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| # Use latest Python, so it understands all syntax. | |
| python-version: "3.7" | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-data-* | |
| merge-multiple: true | |
| - name: Combine coverage and generate report | |
| run: | | |
| python -Im pip install --upgrade "git+https://github.com/percevalw/coveragepy.git#egg=coverage[toml]" | |
| ls -lah | |
| python -Im coverage combine | |
| # Report and write to summary. | |
| python -Im coverage report --skip-covered --skip-empty --format=detailed-markdown >> $GITHUB_STEP_SUMMARY | |
| echo '## Coverage Report' > step-summary.md | |
| cat $GITHUB_STEP_SUMMARY >> step-summary.md | |
| coverage report > coverage-report.txt | |
| echo "main_coverage=$(grep 'TOTAL' coverage-report.txt | awk '{print $NF}' | sed 's/%//')" > main-coverage.txt | |
| - name: Upload Coverage Percentage for Main | |
| uses: actions/upload-artifact@v4 | |
| if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/main' | |
| with: | |
| name: main-coverage-percentage | |
| path: main-coverage.txt | |
| - name: Compare Coverage Percentages | |
| if: github.ref != 'refs/heads/main' && github.ref != 'refs/heads/main' && github.event_name == 'pull_request' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| main_coverage=$(cat ./.github/workflows/artifacts/main-coverage.txt || echo "90") | |
| branch_coverage=$(coverage report | grep 'TOTAL' | awk '{print $NF}' | sed 's/%//') | |
| # echo "Main Coverage: $main_coverage%" > step-summary.md | |
| # echo "Branch Coverage: $branch_coverage%" > step-summary.md | |
| # Echo comparison in with cross if it's lower, and checkmark if it's higher. | |
| if (( $(echo "$branch_coverage < $main_coverage" | bc -l) )); then | |
| echo "Coverage has decreased from the main branch." | |
| echo >> step-summary.md | |
| echo "Branch Coverage: $branch_coverage% < Main Coverage: $main_coverage% :x:" >> step-summary.md | |
| FAILED=true | |
| else | |
| echo "Coverage is sufficient or improved." | |
| echo >> step-summary.md | |
| echo "Branch Coverage: **$branch_coverage%** ≥ Main Coverage: **$main_coverage%** :white_check_mark:" >> step-summary.md | |
| FAILED=false | |
| fi | |
| COMMENT_BODY_JSON=$(jq -Rs . <<< $(cat step-summary.md)) | |
| HEADER="Authorization: token $GITHUB_TOKEN" | |
| PR_COMMENTS_URL="https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.pull_request.number }}/comments" | |
| # Fetch existing comments to find if one from this workflow already exists | |
| COMMENTS=$(curl -s -H "$HEADER" "$PR_COMMENTS_URL") | |
| COMMENT_ID=$(echo "$COMMENTS" | jq -r '.[] | select(.user.login == "github-actions[bot]" and (.body | startswith("## Coverage Report"))) | .id') | |
| # Check if we have a comment ID, if so, update it, otherwise create a new one | |
| if [[ "$COMMENT_ID" ]]; then | |
| # Update existing comment | |
| curl -s -X PATCH -H "$HEADER" -H "Content-Type: application/json" -d "{\"body\": $COMMENT_BODY_JSON}" "https://api.github.com/repos/${{ github.repository }}/issues/comments/$COMMENT_ID" | |
| else | |
| # Post new comment | |
| curl -s -X POST -H "$HEADER" -H "Content-Type: application/json" -d "{\"body\": $COMMENT_BODY_JSON}" "$PR_COMMENTS_URL" | |
| fi | |
| if [[ "$FAILED" == "true" ]]; then | |
| exit 1 | |
| fi | |
| Installation: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install library | |
| run: | | |
| pip install . |