Merge pull request #245 from JasonYangShadow/upgrade_sif

cherry picking missing commits from sylabs sif repo

.github/workflows/ci.yml

@@ -1,5 +1,6 @@
 name: ci
 on:
+  workflow_dispatch: {}
   pull_request:
   push:
     branches:
@@ -22,7 +23,7 @@ jobs:
       - name: Set up Go
         uses: actions/setup-go@v1
         with:
-          go-version: '1.21.x'
+          go-version: '1.22.8'
 
       - name: Check go.mod and go.sum are tidy
         run: |
@@ -41,7 +42,7 @@ jobs:
       - name: Install Lint
         uses: golangci/golangci-lint-action@v2
         with:
-          version: v1.56
+          version: v1.61
           skip-pkg-cache: true
           skip-build-cache: true
 

.github/workflows/goreleaser.yml

@@ -20,7 +20,7 @@ jobs:
       - name: Set up Go
         uses: actions/setup-go@v2
         with:
-          go-version: 1.21.x
+          go-version: 1.22.8
 
       - name: Install syft
         run: curl -sSfL https://raw.githubusercontent.com/anchore/syft/main/install.sh | sh -s -- -b /usr/local/bin

.golangci.yml

@@ -10,21 +10,21 @@ linters:
     - bodyclose
     - containedctx
     - contextcheck
+    - copyloopvar
     - decorder
     - dogsled
     - dupl
     - dupword
+    - err113
     - errcheck
     - errchkjson
     - errname
     - errorlint
-    - exportloopref
     - forcetypeassert
     - gochecknoinits
     - gocritic
     - godot
     - godox
-    - goerr113
     - gofumpt
     - goimports
     - gomodguard
@@ -35,6 +35,7 @@ linters:
     - grouper
     - ineffassign
     - interfacebloat
+    - intrange
     - ireturn
     - lll
     - maintidx

go.mod

@@ -1,33 +1,31 @@
 module github.com/apptainer/sif/v2
 
-go 1.21
-
-toolchain go1.21.9
+go 1.22.8
 
 require (
 	github.com/ProtonMail/go-crypto v1.0.0
 	github.com/google/go-containerregistry v0.20.2
 	github.com/google/uuid v1.6.0
 	github.com/sebdah/goldie/v2 v2.5.5
-	github.com/secure-systems-lab/go-securesystemslib v0.8.0
-	github.com/sigstore/sigstore v1.8.4
+	github.com/sigstore/sigstore v1.8.10
 	github.com/spf13/cobra v1.8.1
 	github.com/spf13/pflag v1.0.5
 )
 
 require (
 	github.com/cloudflare/circl v1.3.7 // indirect
+	github.com/go-jose/go-jose/v4 v4.0.2 // indirect
 	github.com/inconshreveable/mousetrap v1.1.0 // indirect
 	github.com/kr/pretty v0.2.1 // indirect
-	github.com/letsencrypt/boulder v0.0.0-20230907030200-6d76a0f91e1e // indirect
+	github.com/letsencrypt/boulder v0.0.0-20240620165639-de9c06129bec // indirect
 	github.com/opencontainers/go-digest v1.0.0 // indirect
 	github.com/pmezard/go-difflib v1.0.0 // indirect
+	github.com/secure-systems-lab/go-securesystemslib v0.8.0 // indirect
 	github.com/sergi/go-diff v1.1.0 // indirect
 	github.com/titanous/rocacheck v0.0.0-20171023193734-afe73141d399 // indirect
-	golang.org/x/crypto v0.23.0 // indirect
-	golang.org/x/sys v0.20.0 // indirect
-	golang.org/x/term v0.20.0 // indirect
-	google.golang.org/grpc v1.56.3 // indirect
-	gopkg.in/go-jose/go-jose.v2 v2.6.3 // indirect
+	golang.org/x/crypto v0.28.0 // indirect
+	golang.org/x/sys v0.26.0 // indirect
+	golang.org/x/term v0.25.0 // indirect
+	google.golang.org/protobuf v1.34.2 // indirect
 	gopkg.in/yaml.v3 v3.0.1 // indirect
 )

go.sum

@@ -14,10 +14,12 @@ github.com/cpuguy83/go-md2man/v2 v2.0.4/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46t
 github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
-github.com/go-test/deep v1.1.0 h1:WOcxcdHcvdgThNXjw0t76K42FXTU7HpNQWHpA2HHNlg=
-github.com/go-test/deep v1.1.0/go.mod h1:5C2ZWiW0ErCdrYzpqxLbTX7MG14M9iiw8DgHncVwcsE=
-github.com/golang/protobuf v1.5.3 h1:KhyjKVUg7Usr/dYsdSqoFveMYd5ko72D+zANwlG1mmg=
-github.com/golang/protobuf v1.5.3/go.mod h1:XVQd3VNwM+JqD3oG2Ue2ip4fOMUkwXdXDdiuN0vRsmY=
+github.com/go-jose/go-jose/v4 v4.0.2 h1:R3l3kkBds16bO7ZFAEEcofK0MkrAJt3jlJznWZG0nvk=
+github.com/go-jose/go-jose/v4 v4.0.2/go.mod h1:WVf9LFMHh/QVrmqrOfqun0C45tMe3RoiKJMPvgWwLfY=
+github.com/go-test/deep v1.1.1 h1:0r/53hagsehfO4bzD2Pgr/+RgHqhmf+k1Bpse2cTu1U=
+github.com/go-test/deep v1.1.1/go.mod h1:5C2ZWiW0ErCdrYzpqxLbTX7MG14M9iiw8DgHncVwcsE=
+github.com/golang/protobuf v1.5.4 h1:i7eJL8qZTpSEXOPTxNKhASYpMn+8e5Q6AdndVa1dWek=
+github.com/golang/protobuf v1.5.4/go.mod h1:lnTiLA8Wa4RWRcIUkrtSVa5nRhsEGBg48fD6rSs7xps=
 github.com/google/go-cmp v0.6.0 h1:ofyhxvXcZhMsU5ulbFiLKl/XBFqE1GSq7atu8tAmTRI=
 github.com/google/go-cmp v0.6.0/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY=
 github.com/google/go-containerregistry v0.20.2 h1:B1wPJ1SN/S7pB+ZAimcciVD+r+yV/l/DSArMxlbwseo=
@@ -34,8 +36,8 @@ github.com/kr/pretty v0.2.1/go.mod h1:ipq/a2n7PKx3OHsz4KJII5eveXtPO4qwEXGdVfWzfn
 github.com/kr/pty v1.1.1/go.mod h1:pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=
 github.com/kr/text v0.1.0 h1:45sCR5RtlFHMR4UwH9sdQ5TC8v0qDQCHnXt+kaKSTVE=
 github.com/kr/text v0.1.0/go.mod h1:4Jbv+DJW3UT/LiOwJeYQe1efqtUx/iVham/4vfdArNI=
-github.com/letsencrypt/boulder v0.0.0-20230907030200-6d76a0f91e1e h1:RLTpX495BXToqxpM90Ws4hXEo4Wfh81jr9DX1n/4WOo=
-github.com/letsencrypt/boulder v0.0.0-20230907030200-6d76a0f91e1e/go.mod h1:EAuqr9VFWxBi9nD5jc/EA2MT1RFty9288TF6zdtYoCU=
+github.com/letsencrypt/boulder v0.0.0-20240620165639-de9c06129bec h1:2tTW6cDth2TSgRbAhD7yjZzTQmcN25sDRPEeinR51yQ=
+github.com/letsencrypt/boulder v0.0.0-20240620165639-de9c06129bec/go.mod h1:TmwEoGCwIti7BCeJ9hescZgRtatxRE+A72pCoPfmcfk=
 github.com/matttproud/golang_protobuf_extensions v1.0.4 h1:mmDVorXM7PCGKw94cs5zkfA9PSy5pEvNWRP0ET0TIVo=
 github.com/matttproud/golang_protobuf_extensions v1.0.4/go.mod h1:BSXmuO+STAnVfrANrmjBb36TMTDstsz7MSK+HVaYKv4=
 github.com/opencontainers/go-digest v1.0.0 h1:apOUWs51W5PlhuyGyz9FCeeBIOUDA/6nW8Oi/yOhh5U=
@@ -59,8 +61,8 @@ github.com/secure-systems-lab/go-securesystemslib v0.8.0/go.mod h1:UH2VZVuJfCYR8
 github.com/sergi/go-diff v1.0.0/go.mod h1:0CfEIISq7TuYL3j771MWULgwwjU+GofnZX9QAmXWZgo=
 github.com/sergi/go-diff v1.1.0 h1:we8PVUC3FE2uYfodKH/nBHMSetSfHDR6scGdBi+erh0=
 github.com/sergi/go-diff v1.1.0/go.mod h1:STckp+ISIX8hZLjrqAeVduY0gWCT9IjLuqbuNXdaHfM=
-github.com/sigstore/sigstore v1.8.4 h1:g4ICNpiENFnWxjmBzBDWUn62rNFeny/P77HUC8da32w=
-github.com/sigstore/sigstore v1.8.4/go.mod h1:1jIKtkTFEeISen7en+ZPWdDHazqhxco/+v9CNjc7oNg=
+github.com/sigstore/sigstore v1.8.10 h1:r4t+TYzJlG9JdFxMy+um9GZhZ2N1hBTyTex0AHEZxFs=
+github.com/sigstore/sigstore v1.8.10/go.mod h1:BekjqxS5ZtHNJC4u3Q3Stvfx2eyisbW/lUZzmPU2u4A=
 github.com/spf13/cobra v1.8.1 h1:e5/vxKd/rZsfSJMUX1agtjeTDf+qv1/JdBF8gg5k9ZM=
 github.com/spf13/cobra v1.8.1/go.mod h1:wHxEcudfqmLYa8iTfL+OuZPbBZkmvliBWKIezN3kD9Y=
 github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=
@@ -73,16 +75,12 @@ github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8
 github.com/titanous/rocacheck v0.0.0-20171023193734-afe73141d399 h1:e/5i7d4oYZ+C1wj2THlRK+oAhjeS/TRQwMfkIuet3w0=
 github.com/titanous/rocacheck v0.0.0-20171023193734-afe73141d399/go.mod h1:LdwHTNJT99C5fTAzDz0ud328OgXz+gierycbcIx2fRs=
 github.com/yuin/goldmark v1.4.13/go.mod h1:6yULJ656Px+3vBD8DxQVa3kxgyrAnzto9xy5taEt/CY=
-go.opentelemetry.io/otel v1.15.0 h1:NIl24d4eiLJPM0vKn4HjLYM+UZf6gSfi9Z+NmCxkWbk=
-go.opentelemetry.io/otel v1.15.0/go.mod h1:qfwLEbWhLPk5gyWrne4XnF0lC8wtywbuJbgfAE3zbek=
-go.opentelemetry.io/otel/trace v1.15.0 h1:5Fwje4O2ooOxkfyqI/kJwxWotggDLix4BSAvpE1wlpo=
-go.opentelemetry.io/otel/trace v1.15.0/go.mod h1:CUsmE2Ht1CRkvE8OsMESvraoZrrcgD1J2W8GV1ev0Y4=
 golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
 golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.3.1-0.20221117191849-2c476679df9a/go.mod h1:hebNnKkNXi2UzZN1eVRvBB7co0a+JxK6XbPiWVs/3J4=
 golang.org/x/crypto v0.7.0/go.mod h1:pYwdfH91IfpZVANVyUOhSIPZaFoJGxTFbZhFTx+dXZU=
-golang.org/x/crypto v0.23.0 h1:dIJU/v2J8Mdglj/8rJ6UUOM3Zc9zLZxVZwwxMooUSAI=
-golang.org/x/crypto v0.23.0/go.mod h1:CKFgDieR+mRhux2Lsu27y0fO304Db0wZe70UKqHu0v8=
+golang.org/x/crypto v0.28.0 h1:GBDwsMXVQi34v5CCYUm2jkJvu4cbtru2U4TN2PSyQnw=
+golang.org/x/crypto v0.28.0/go.mod h1:rmgy+3RHxRZMyY0jjAJShp2zgEdOqj2AO7U0pYmeQ7U=
 golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4/go.mod h1:jJ57K6gSWd91VN4djpZkiMVwK6gcyfeH4XE8wZrZaV4=
 golang.org/x/mod v0.8.0/go.mod h1:iBbtSCu2XBx23ZKBPSOrRkjjQPZFPuis4dIYUhu/chs=
 golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
@@ -103,15 +101,15 @@ golang.org/x/sys v0.2.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.3.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.5.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.20.0 h1:Od9JTbYCk261bKm4M/mw7AklTlFYIa0bIp9BgSm1S8Y=
-golang.org/x/sys v0.20.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
+golang.org/x/sys v0.26.0 h1:KHjCJyddX0LoSTb3J+vWpupP9p0oznkqVk/IfjymZbo=
+golang.org/x/sys v0.26.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
 golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
 golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8=
 golang.org/x/term v0.2.0/go.mod h1:TVmDHMZPmdnySmBfhjOoOdhjzdE1h4u1VwSiw2l1Nuc=
 golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k=
 golang.org/x/term v0.6.0/go.mod h1:m6U89DPEgQRMq3DNkDClhWw02AUbt2daBVO4cn4Hv9U=
-golang.org/x/term v0.20.0 h1:VnkxpohqXaOBYJtBmEppKUG6mXpi+4O6purfc2+sMhw=
-golang.org/x/term v0.20.0/go.mod h1:8UkIAJTvZgivsXaD6/pH6U9ecQzZ45awqEOzuCvwpFY=
+golang.org/x/term v0.25.0 h1:WtHI/ltw4NvSUig5KARz9h521QvRC8RmF/cuYqifU24=
+golang.org/x/term v0.25.0/go.mod h1:RPyXicDX+6vLxogjjRxjgD2TKtmAO6NZBsBRfrOLu7M=
 golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
 golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
@@ -123,18 +121,16 @@ golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtn
 golang.org/x/tools v0.1.12/go.mod h1:hNGJHUnrk76NpqgfD5Aqm5Crs+Hm0VOH/i9J2+nxYbc=
 golang.org/x/tools v0.6.0/go.mod h1:Xwgl3UAJ/d3gWutnCtw505GrjyAbvKui8lOU390QaIU=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
-google.golang.org/genproto v0.0.0-20230410155749-daa745c078e1 h1:KpwkzHKEF7B9Zxg18WzOa7djJ+Ha5DzthMyZYQfEn2A=
-google.golang.org/genproto v0.0.0-20230410155749-daa745c078e1/go.mod h1:nKE/iIaLqn2bQwXBg8f1g2Ylh6r5MN5CmZvuzZCgsCU=
-google.golang.org/grpc v1.56.3 h1:8I4C0Yq1EjstUzUJzpcRVbuYA2mODtEmpWiQoN/b2nc=
-google.golang.org/grpc v1.56.3/go.mod h1:I9bI3vqKfayGqPUAwGdOSu7kt6oIJLixfffKrpXqQ9s=
-google.golang.org/protobuf v1.33.0 h1:uNO2rsAINq/JlFpSdYEKIZ0uKD/R9cpdv0T+yoGwGmI=
-google.golang.org/protobuf v1.33.0/go.mod h1:c6P6GXX6sHbq/GpV6MGZEdwhWPcYBgnhAHhKbcUYpos=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240520151616-dc85e6b867a5 h1:Q2RxlXqh1cgzzUgV261vBO2jI5R/3DD1J2pM0nI4NhU=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240520151616-dc85e6b867a5/go.mod h1:EfXuqaE1J41VCDicxHzUDm+8rk+7ZdXzHV0IhO/I6s0=
+google.golang.org/grpc v1.64.0 h1:KH3VH9y/MgNQg1dE7b3XfVK0GsPSIzJwdF617gUSbvY=
+google.golang.org/grpc v1.64.0/go.mod h1:oxjF8E3FBnjp+/gVFYdWacaLDx9na1aqy9oovLpxQYg=
+google.golang.org/protobuf v1.34.2 h1:6xV6lTsCfpGD21XK49h7MhtcApnLqkfYgPcdHftf6hg=
+google.golang.org/protobuf v1.34.2/go.mod h1:qYOHts0dSfpeUzUFpOMr/WGzszTmLH+DiWniOlNbLDw=
 gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk=
 gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c/go.mod h1:JHkPIbrfpd72SG/EVd6muEfDQjcINNoR0C8j2r3qZ4Q=
-gopkg.in/go-jose/go-jose.v2 v2.6.3 h1:nt80fvSDlhKWQgSWyHyy5CfmlQr+asih51R8PTWNKKs=
-gopkg.in/go-jose/go-jose.v2 v2.6.3/go.mod h1:zzZDPkNNw/c9IE7Z9jr11mBZQhKQTMzoEEIoEdZlFBI=
 gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA=

internal/app/siftool/info_test.go

@@ -66,8 +66,6 @@ func Test_readableSize(t *testing.T) {
 		},
 	}
 	for _, tt := range tests {
-		tt := tt
-
 		t.Run(tt.name, func(t *testing.T) {
 			if got, want := readableSize(tt.size), tt.want; got != want {
 				t.Errorf("got %v, want %v", got, want)

pkg/integrity/clearsign_test.go

@@ -55,7 +55,6 @@ func Test_clearsignEncoder_signMessage(t *testing.T) {
 	}
 
 	for _, tt := range tests {
-		tt := tt
 		t.Run(tt.name, func(t *testing.T) {
 			b := bytes.Buffer{}
 
@@ -174,7 +173,6 @@ func Test_clearsignDecoder_verifyMessage(t *testing.T) {
 	}
 
 	for _, tt := range tests {
-		tt := tt
 		t.Run(tt.name, func(t *testing.T) {
 			b := bytes.Buffer{}
 

pkg/integrity/digest_test.go

@@ -94,7 +94,6 @@ func TestNewLegacyDigest(t *testing.T) {
 	}
 
 	for _, tt := range tests {
-		tt := tt
 		t.Run(tt.name, func(t *testing.T) {
 			d, err := newLegacyDigest(tt.ht, []byte(tt.text))
 			if got, want := err, tt.wantError; !errors.Is(got, want) {
@@ -160,7 +159,6 @@ func TestDigest_MarshalJSON(t *testing.T) {
 	}
 
 	for _, tt := range tests {
-		tt := tt
 		t.Run(tt.name, func(t *testing.T) {
 			value, err := hex.DecodeString(tt.value)
 			if err != nil {
@@ -265,7 +263,6 @@ func TestDigest_UnmarshalJSON(t *testing.T) {
 	}
 
 	for _, tt := range tests {
-		tt := tt
 		t.Run(tt.name, func(t *testing.T) {
 			var d digest