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agmcarthur committed Feb 6, 2024
1 parent eed88de commit 0602202
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions docs/rgi_main.rst
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Expand Up @@ -190,9 +190,7 @@ This same analysis can be threaded over many processors if high-performance comp

.. code-block:: sh
rgi main --input_sequence /path/to/nucleotide_input.fasta
--output_file /path/to/output_file --local --clean -a DIAMOND --low_quality
--include_nudge --num_threads 40 --split_prodigal_jobs
rgi main --input_sequence /path/to/nucleotide_input.fasta --output_file /path/to/output_file --local --clean -a DIAMOND --low_quality --include_nudge --num_threads 40 --split_prodigal_jobs
Running RGI main with Protein Sequences
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