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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

Popular repositories Loading

  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 168 166

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    Python 110 68

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 79 33

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 46 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 26 42

  6. readucks readucks Public

    Nanopore read de-multiplexer

    Python 13 3

Repositories

Showing 10 of 27 repositories
  • artic-rsv Public
    artic-network/artic-rsv’s past year of commit activity
    Nextflow 3 1 3 0 Updated Aug 2, 2024
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 4 GPL-3.0 3 2 1 Updated Aug 1, 2024
  • rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    artic-network/rampart’s past year of commit activity
    JavaScript 79 GPL-3.0 33 27 17 Updated Sep 30, 2023
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 110 MIT 86 36 11 Updated Sep 19, 2023
  • artic-measles Public

    Repository for realtime sequencing of measles virus using the MinION

    artic-network/artic-measles’s past year of commit activity
    1 5 2 0 Updated Sep 14, 2023
  • rampart-nipah Public
    artic-network/rampart-nipah’s past year of commit activity
    1 0 0 0 Updated Sep 14, 2023
  • rampart-iva Public
    artic-network/rampart-iva’s past year of commit activity
    1 0 0 0 Updated Sep 14, 2023
  • rampart-ebov Public

    A RAMPART protocol and environment for sequencing Ebola viruses

    artic-network/rampart-ebov’s past year of commit activity
    1 1 0 0 Updated Sep 14, 2023
  • primer-schemes Public

    Primer schemes for real-time genome epidemiology

    artic-network/primer-schemes’s past year of commit activity
    Python 26 CC-BY-4.0 42 1 0 Updated Jun 14, 2023
  • artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    artic-network/artic-ncov2019’s past year of commit activity
    Python 168 CC-BY-4.0 166 44 2 Updated Mar 22, 2023
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