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Document StanSample usage with ArviZ #261

Merged
merged 12 commits into from
Jan 16, 2023
Merged

Document StanSample usage with ArviZ #261

merged 12 commits into from
Jan 16, 2023

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sethaxen
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CmdStan.jl has now been archived in favor of Stan.jl (and in particular the component package StanSample.jl). Recently native InferenceData support was added to StanSample. This PR documents that support and switches from testing against CmdStan.jl's MCMCChains output to testing against StanSample.jl's MCMCChains output.

Currently the Quickstart build errors because Python ArviZ's plot_pair assumes the divergence variable has a boolean eltype, whereas StanSample returns it with a Float64 eltype. See StanJulia/StanSample.jl#68

Closes #238

@sethaxen sethaxen marked this pull request as ready for review January 16, 2023 22:54
@sethaxen sethaxen merged commit e91e1b6 into main Jan 16, 2023
@sethaxen sethaxen deleted the stansample branch January 16, 2023 23:34
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Converting directly from StanSample
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