afib_detection

Data store

Once logged into lab server navigate to /zfsmladi/originals, and within you'll find a large store of h5 files. Find the functions you can use to pull, read, and manipulate these files within the /data directory as seen below.

Note If you'd like to read from remote data on your local machine check out our faq repo in the Mounting remote disks section

Dev setup

python -m venv {your virtual environment name}
source ./{your virtual environment name}/bin/activate
pip install -r requirements.txt

Repository contents

Below you'll see a directory overview with potential files of interest explained

.
├── featurize.py
├── train.py
├── test.py
├── analysis.py
├── requirements-dev.txt
├── requirements.txt
├── data
│   ├── assets                  # store for data worth remembering
│   ├── config.yml
│   ├── computers.py            # data computation
│   ├── manipulators.py         # data manipulation
│   ├── stratified_sample.py    # functions for collecting segments from mladi store
│   └── utilities.py            # utilities for finding and manipulating h5 source files
├── model
│   ├── config.yml
│   ├── assets
│   ├── labelmodel.py
│   ├── mitbih.py
│   └── utilities.py
└── results
    └── assets                  # storage for output plots/artifacts