Merge pull request #36 from avantonder/apha

rewrite python scripts
avantonder · Nov 14, 2022 · 26ef910 · 26ef910
2 parents c89edb1 + 46e6d14
commit 26ef910
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -41,7 +41,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool
 
 ## Quick Start
 
-1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.10.3`)
+1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=22.04.3`)
 
 2. Install any of [`Docker`](https://docs.docker.com/engine/installation/), [`Singularity`](https://www.sylabs.io/guides/3.0/user-guide/) (you can follow [this tutorial](https://singularity-tutorial.github.io/01-installation/)), [`Podman`](https://podman.io/), [`Shifter`](https://nersc.gitlab.io/development/shifter/how-to-use/) or [`Charliecloud`](https://hpc.github.io/charliecloud/) for full pipeline reproducibility _(you can use [`Conda`](https://conda.io/miniconda.html) both to install Nextflow itself and also to manage software within pipelines. Please only use it within pipelines as a last resort; see [docs](https://nf-co.re/usage/configuration#basic-configuration-profiles))_.
 

diff --git a/conf/test.config b/conf/test.config
@@ -32,6 +32,6 @@ params {
     // Options to speed up test
     skip_kraken2    = true
     subsampling_off = true
-    //skip_clusters   = true
+    skip_clusters   = true
     skip_alignment  = true
 }
diff --git a/nextflow.config b/nextflow.config
@@ -188,8 +188,8 @@ manifest {
     homePage        = 'https://github.com/avantonder/bovisanalyzer'
     description     = 'nextflow pipeline for analyzing Mycobacterium bovis genomes'
     mainScript      = 'main.nf'
-    nextflowVersion = '!>=21.10.3'
-    version         = '1.11'
+    nextflowVersion = '!>=22.04.3'
+    version         = '1.2'
 }
 
 // Load modules.config for DSL2 module specific options