Fixing imports

.JuliaFormatter.toml

@@ -1,6 +1,6 @@
-style = "blue"
+style = "sciml"
+format_markdown = false
 whitespace_in_kwargs = false
-always_use_return = true
 margin = 92
 indent = 4
 format_docstrings = true

Project.toml

@@ -1,7 +1,7 @@
 name = "SpectralIndices"
 uuid = "df0093a1-273d-40bc-819a-796ec3476907"
 authors = ["MartinuzziFrancesco <[email protected]>"]
-version = "0.2.12"
+version = "0.2.13"
 
 [deps]
 Compat = "34da2185-b29b-5c13-b0c7-acf172513d20"

README.md

@@ -20,8 +20,8 @@
 [julia-img]: https://img.shields.io/badge/julia-v1.10+-blue.svg
 [julia-url]: https://julialang.org/
 
-[style-img]: https://img.shields.io/badge/code%20style-blue-4495d1.svg
-[style-url]: https://github.com/invenia/BlueStyle
+[style-img]: https://img.shields.io/static/v1?label=code%20style&message=SciML&color=9558b2&labelColor=389826
+[style-url]: https://github.com/SciML/SciMLStyle
 
 [aqua-img]: https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg
 [aqua-url]: https://github.com/JuliaTesting/Aqua.jl

docs/make.jl

@@ -14,18 +14,18 @@ makedocs(;
     format=DocumenterVitepress.MarkdownVitepress(;
         repo="github.com/awesome-spectral-indices/SpectralIndices.jl", # this must be the full URL!
         devbranch="main",
-        devurl="dev",
+        devurl="dev"
     ),
     draft=false,
     source="src",
     build="build",
-    pages=pages,
+    pages=pages
 )
 
 deploydocs(;
     repo="github.com/awesome-spectral-indices/SpectralIndices.jl",
     target="build", # this is where Vitepress stores its output
     branch="gh-pages",
     devbranch="main",
-    push_preview=true,
+    push_preview=true
 )

docs/package.json

@@ -2,7 +2,7 @@
     "devDependencies": {
       "markdown-it": "^14.0.0",
       "markdown-it-mathjax3": "^4.3.2",
-      "vitepress": "^1.0.0-rc.43",
+      "vitepress": "1.5.0",
       "vitepress-plugin-tabs": "^0.5.0",
       "vitest": "^1.3.0"
     },

docs/pages.jl

@@ -4,11 +4,11 @@ pages = [
     "Tutorials" => [
         "Basics" => "tutorials/basic_types.md",
         "DataFrames.jl" => "tutorials/dataframes.md",
-        "YAXArrays.jl" => "tutorials/yaxarrays.md",
+        "YAXArrays.jl" => "tutorials/yaxarrays.md"
     ],
     "API Documentation" => [
         "Axioms" => "api/axioms.md",
         "Compute" => "api/compute.md",
-        "Datasets" => "api/datasets.md",
-    ],
+        "Datasets" => "api/datasets.md"
+    ]
 ]

ext/SpectralIndicesDataFramesExt.jl

@@ -3,17 +3,17 @@ module SpectralIndicesDataFramesExt
 using SpectralIndices
 using DataFrames
 import SpectralIndices:
-    create_params,
-    AbstractSpectralIndex,
-    compute_index,
-    create_indices,
-    linear,
-    poly,
-    RBF,
-    load_dataset,
-    load_json
-
-function create_params(kw_args::Pair{Symbol,DataFrame}...)
+                        create_params,
+                        AbstractSpectralIndex,
+                        compute_index,
+                        create_indices,
+                        linear,
+                        poly,
+                        RBF,
+                        load_dataset,
+                        load_json
+
+function create_params(kw_args::Pair{Symbol, DataFrame}...)
     combined_df = DataFrame()
 
     for pair in kw_args
@@ -25,20 +25,19 @@ function create_params(kw_args::Pair{Symbol,DataFrame}...)
 end
 
 function compute_index(
-    index::AbstractSpectralIndex, params::DataFrame; indices = create_indices()
+        index::AbstractSpectralIndex, params::DataFrame; indices=create_indices()
 )
     # Convert DataFrame to a dictionary for each row and compute the index
-    results = [
-        compute_index(index, Dict(zip(names(params), row)); indices=indices) for
-        row in eachrow(params)
-    ]
+    results = [compute_index(index, Dict(zip(names(params), row)); indices=indices)
+               for
+               row in eachrow(params)]
 
     # Return the results as a DataFrame with the column named after the index
     return DataFrame(Symbol(index.short_name) => results)
 end
 
 function compute_index(
-    index::Vector{<:AbstractSpectralIndex}, params::DataFrame; indices = create_indices()
+        index::Vector{<:AbstractSpectralIndex}, params::DataFrame; indices=create_indices()
 )
     # Similar conversion and computation for a vector of indices
     result_dfs = DataFrame()
@@ -68,7 +67,7 @@ function RBF(params::DataFrame)
     return result_df
 end
 
-function load_dataset(dataset::String, ::Type{T}) where {T<:DataFrame}
+function load_dataset(dataset::String, ::Type{T}) where {T <: DataFrame}
     datasets = Dict("spectral" => "spectral.json")
 
     if dataset in keys(datasets)
@@ -88,7 +87,7 @@ function load_dataset(dataset::String, ::Type{T}) where {T<:DataFrame}
     df = DataFrame(; index=all_indices)
 
     for col_name in keys(ds)
-        df[!, col_name] = Vector{Union{Missing,Any}}(missing, length(all_indices))
+        df[!, col_name] = Vector{Union{Missing, Any}}(missing, length(all_indices))
     end
 
     for (col_name, col_data) in ds

ext/SpectralIndicesYAXArraysExt.jl

@@ -4,25 +4,25 @@ using SpectralIndices
 using YAXArrays
 using DimensionalData
 import SpectralIndices:
-    check_params,
-    create_params,
-    order_params,
-    AbstractSpectralIndex,
-    compute_index,
-    create_indices,
-    linear,
-    poly,
-    RBF,
-    load_dataset,
-    load_json
+                        check_params,
+                        create_params,
+                        order_params,
+                        AbstractSpectralIndex,
+                        compute_index,
+                        create_indices,
+                        linear,
+                        poly,
+                        RBF,
+                        load_dataset,
+                        load_json
 
 function check_params(index::AbstractSpectralIndex, params::YAXArray)
     for band in index.bands
         if !(band in params.Variables)
             throw(
                 ArgumentError(
-                    "'$band' is missing in the parameters for $index computation!"
-                ),
+                "'$band' is missing in the parameters for $index computation!"
+            ),
             )
         end
     end
@@ -37,7 +37,7 @@ function order_params(index::AbstractSpectralIndex, params::YAXArray)
     return new_params
 end
 
-function create_params(kw_args::Pair{Symbol,<:YAXArray}...)
+function create_params(kw_args::Pair{Symbol, <:YAXArray}...)
     params_yaxa = []
     names_yaxa = []
     for (key, value) in kw_args
@@ -52,7 +52,7 @@ end
 ## TODO: simplify even further
 # this is same function contente as dispatch on Dict
 function compute_index(
-    index::AbstractSpectralIndex, params::YAXArray; indices = create_indices()
+        index::AbstractSpectralIndex, params::YAXArray; indices=create_indices()
 )
     check_params(index, params)
     params = order_params(index, params)
@@ -62,7 +62,7 @@ function compute_index(
 end
 
 function compute_index(
-    index::Vector{<:AbstractSpectralIndex}, params::YAXArray; indices = create_indices()
+        index::Vector{<:AbstractSpectralIndex}, params::YAXArray; indices=create_indices()
 )
     results = []
     for (nidx, idx) in enumerate(index)
@@ -75,8 +75,8 @@ function compute_index(
 end
 
 function _compute_index(
-    ::Type{T}, idx::AbstractSpectralIndex, prms::YAXArray...
-) where {T<:Number}
+        ::Type{T}, idx::AbstractSpectralIndex, prms::YAXArray...
+) where {T <: Number}
     return idx.(T, prms...)
 end
 
@@ -89,7 +89,7 @@ function poly(params::YAXArray)
         params[Variable=At("a")],
         params[Variable=At("b")],
         params[Variable=At("c")],
-        params[Variable=At("p")],
+        params[Variable=At("p")]
     )
 end
 
@@ -99,7 +99,7 @@ function RBF(params::YAXArray)
     )
 end
 
-function load_dataset(dataset::String, ::Type{T}) where {T<:YAXArray}
+function load_dataset(dataset::String, ::Type{T}) where {T <: YAXArray}
     datasets = Dict("sentinel" => "S2_10m.json")
 
     if dataset in keys(datasets)

src/SpectralIndices.jl

@@ -1,12 +1,9 @@
 module SpectralIndices
 
-using Compat: @compat #for @compat public
-using Dates
-using Downloads
-using JSON
-
-abstract type AbstractSpectralIndex end
-abstract type AbstractPlatformBand end
+using Compat: @compat
+using Dates: Date, @dateformat_str
+using Downloads: Downloads
+using JSON: parsefile
 
 indices_funcs = Dict()
 include("utils.jl")
@@ -24,13 +21,14 @@ indices = create_indices()
 bands = create_bands()
 constants = create_constants()
 
-@compat(public, (create_indices,
-    create_bands,
-    create_constants,
-    load_json,
-    check_params,
-    create_params,
-    order_params))
+@compat(public,
+    (create_indices,
+        create_bands,
+        create_constants,
+        load_json,
+        check_params,
+        create_params,
+        order_params))
 
 export get_indices, create_indexfun
 export get_datasets, load_dataset

src/bands.jl

@@ -1,4 +1,4 @@
-struct Band{S<:String,F<:Number,P<:Dict{String,PlatformBand}}
+struct Band{S <: String, F <: Number, P <: Dict{String, PlatformBand}}
     short_name::S
     long_name::S
     common_name::S
@@ -54,14 +54,14 @@ julia> bands["B"].long_name
 
 ```
 """
-function Band(band::Dict{String,Any})
+function Band(band::Dict{String, Any})
     short_name = band["short_name"]
     long_name = band["long_name"]
     common_name = band["common_name"]
     min_wavelength = band["min_wavelength"]
     max_wavelength = band["max_wavelength"]
 
-    platforms = Dict{String,PlatformBand}()
+    platforms = Dict{String, PlatformBand}()
 
     for (platform, platform_info) in band["platforms"]
         if isa(platform_info, PlatformBand)
@@ -88,7 +88,7 @@ end
 
 function create_bands()
     bands_dict = load_json("bands.json")
-    bands_class = Dict{String,Band}()
+    bands_class = Dict{String, Band}()
 
     for (key, value) in bands_dict
         bands_class[key] = Band(value)