Update dependencies and patches #1322
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| name: Build and Test (Linux) | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-and-test-linux: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: # Pairwise testing (from allpairspy) | |
| - compiler: gcc | |
| mpi: mpich | |
| math-libs: aocl | |
| build-shared: static | |
| with-64bit-int: int64 | |
| with-openmp: openmp | |
| with-solver: strumpack | |
| with-eigensolver: arpack | |
| - compiler: clang | |
| mpi: mpich | |
| math-libs: aocl | |
| build-shared: shared | |
| with-64bit-int: int64 | |
| with-openmp: serial | |
| with-solver: superlu | |
| with-eigensolver: arpack | |
| - compiler: gcc | |
| mpi: openmpi | |
| math-libs: openblas | |
| build-shared: shared | |
| with-64bit-int: int32 | |
| with-openmp: openmp | |
| with-solver: strumpack | |
| with-eigensolver: slepc | |
| - compiler: intel | |
| mpi: intelmpi | |
| math-libs: intelmkl | |
| build-shared: static | |
| with-64bit-int: int64 | |
| with-openmp: openmp | |
| with-solver: superlu | |
| with-eigensolver: slepc | |
| - compiler: intel | |
| mpi: intelmpi | |
| math-libs: intelmkl | |
| build-shared: static | |
| with-64bit-int: int32 | |
| with-openmp: serial | |
| with-solver: strumpack | |
| with-eigensolver: arpack | |
| - compiler: intel | |
| mpi: intelmpi | |
| math-libs: intelmkl | |
| build-shared: shared | |
| with-64bit-int: int32 | |
| with-openmp: openmp | |
| with-solver: strumpack | |
| with-eigensolver: slepc | |
| - compiler: gcc | |
| mpi: openmpi | |
| math-libs: aocl | |
| build-shared: static | |
| with-64bit-int: int32 | |
| with-openmp: serial | |
| with-solver: strumpack | |
| with-eigensolver: slepc | |
| - compiler: clang | |
| mpi: mpich | |
| math-libs: aocl | |
| build-shared: static | |
| with-64bit-int: int32 | |
| with-openmp: serial | |
| with-solver: superlu | |
| with-eigensolver: slepc | |
| runs-on: palace_ubuntu-latest_16-core | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Configure Open MPI | |
| if: matrix.mpi == 'openmpi' | |
| run: | | |
| sudo apt-get install -y openmpi-bin libopenmpi-dev | |
| - name: Configure MPICH | |
| if: matrix.mpi == 'mpich' | |
| run: | | |
| sudo apt-get install -y mpich libmpich-dev | |
| - name: Configure Intel MPI | |
| if: matrix.mpi == 'intelmpi' | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: Configure Clang compiler | |
| if: matrix.compiler == 'clang' | |
| run: | | |
| sudo apt-get install -y clang lld | |
| - name: Configure Intel oneAPI compiler | |
| if: matrix.compiler == 'intel' | |
| run: | | |
| sudo apt-get install -y intel-oneapi-compiler-dpcpp-cpp \ | |
| intel-oneapi-compiler-fortran | |
| - name: Install math libraries (OpenBLAS) | |
| if: matrix.math-libs == 'openblas' | |
| run: | | |
| if [[ "${{ matrix.with-openmp }}" == 'openmp' ]]; then | |
| sudo apt-get install -y libopenblas-openmp-dev | |
| else | |
| sudo apt-get install -y libopenblas-serial-dev | |
| fi | |
| - name: Install math libraries (Intel oneAPI MKL) | |
| if: matrix.math-libs == 'intelmkl' | |
| run: | | |
| sudo apt-get install -y intel-oneapi-mkl intel-oneapi-mkl-devel | |
| - name: Install math libraries (AOCL) | |
| if: matrix.math-libs == 'aocl' | |
| run: | | |
| wget https://download.amd.com/developer/eula/aocl/aocl-4-1/aocl-linux-gcc-4.1.0_1_amd64.deb | |
| sudo apt-get install -y ./aocl-linux-gcc-4.1.0_1_amd64.deb | |
| rm aocl-linux-gcc-*.deb | |
| - name: Build Palace | |
| env: | |
| CMAKE_BUILD_TYPE: Release | |
| NUM_PROC_BUILD_MAX: '32' | |
| run: | | |
| # Configure environment | |
| if [[ "${{ matrix.compiler }}" == 'intel' ]] || \ | |
| [[ "${{ matrix.mpi }}" == 'intelmpi' ]] || \ | |
| [[ "${{ matrix.math-libs }}" == 'intelmkl' ]]; then | |
| source /opt/intel/oneapi/setvars.sh # Sets PATH, MKLROOT | |
| if [[ "${{ matrix.compiler }}" == 'intel' ]]; then | |
| export CC=icx | |
| export CXX=icpx | |
| export FC=ifx | |
| fi | |
| elif [[ "${{ matrix.compiler }}" == 'clang' ]]; then | |
| export CC=clang | |
| export CXX=clang++ | |
| export FC=gfortran-12 | |
| export LDFLAGS='-fuse-ld=lld' | |
| elif [[ "${{ matrix.compiler }}" == 'gcc' ]]; then | |
| export CC=gcc-12 | |
| export CXX=g++-12 | |
| export FC=gfortran-12 | |
| fi | |
| if [[ "${{ matrix.math-libs }}" == 'aocl' ]]; then | |
| export AOCLROOT=/opt/AMD/aocl/aocl-linux-gcc-4.1.0/gcc | |
| export LD_LIBRARY_PATH=$AOCLROOT/lib:$LD_LIBRARY_PATH | |
| fi | |
| export NUM_PROC_BUILD=$(nproc 2> /dev/null || sysctl -n hw.ncpu) | |
| if [[ "$NUM_PROC_BUILD" -gt "$NUM_PROC_BUILD_MAX" ]]; then | |
| NUM_PROC_BUILD=$NUM_PROC_BUILD_MAX | |
| fi | |
| [[ "${{ matrix.build-shared }}" == 'shared' ]] && BUILD_SHARED='ON' || BUILD_SHARED='OFF' | |
| [[ "${{ matrix.with-64bit-int }}" == 'int64' ]] && WITH_INT64='ON' || WITH_INT64='OFF' | |
| [[ "${{ matrix.with-openmp }}" == 'openmp' ]] && WITH_OPENMP='ON' || WITH_OPENMP='OFF' | |
| [[ "${{ matrix.with-solver }}" == 'superlu' ]] && WITH_SUPERLU='ON' || WITH_SUPERLU='OFF' | |
| [[ "${{ matrix.with-solver }}" == 'strumpack' ]] && WITH_STRUMPACK='ON' || WITH_STRUMPACK='OFF' | |
| [[ "${{ matrix.with-solver }}" == 'mumps' ]] && WITH_MUMPS='ON' || WITH_MUMPS='OFF' | |
| [[ "${{ matrix.with-eigensolver }}" == 'slepc' ]] && WITH_SLEPC='ON' || WITH_SLEPC='OFF' | |
| [[ "${{ matrix.with-eigensolver }}" == 'arpack' ]] && WITH_ARPACK='ON' || WITH_ARPACK='OFF' | |
| # Build and install (with unit tests) | |
| mkdir palace-build && cd palace-build | |
| cmake .. \ | |
| -DCMAKE_INSTALL_PREFIX=$(pwd)/../palace-install \ | |
| -DBUILD_SHARED_LIBS=$BUILD_SHARED \ | |
| -DPALACE_WITH_64BIT_INT=$WITH_INT64 \ | |
| -DPALACE_WITH_OPENMP=$WITH_OPENMP \ | |
| -DPALACE_WITH_SUPERLU=$WITH_SUPERLU \ | |
| -DPALACE_WITH_STRUMPACK=$WITH_STRUMPACK \ | |
| -DPALACE_WITH_MUMPS=$WITH_MUMPS \ | |
| -DPALACE_WITH_SLEPC=$WITH_SLEPC \ | |
| -DPALACE_WITH_ARPACK=$WITH_ARPACK | |
| make -j$NUM_PROC_BUILD palace-tests | |
| - name: Run unit tests | |
| env: | |
| NUM_PROC_TEST_MAX: '2' | |
| run: | | |
| # Configure environment | |
| if [[ "${{ matrix.compiler }}" == 'intel' ]] || \ | |
| [[ "${{ matrix.mpi }}" == 'intelmpi' ]] || \ | |
| [[ "${{ matrix.math-libs }}" == 'intelmkl' ]]; then | |
| source /opt/intel/oneapi/setvars.sh # Sets PATH, MKLROOT | |
| fi | |
| if [[ "${{ matrix.with-openmp }}" == 'true' ]]; then | |
| export OMP_NUM_THREADS=2 | |
| else | |
| export OMP_NUM_THREADS=1 | |
| fi | |
| export LD_LIBRARY_PATH=$(pwd)/palace-install/lib:$LD_LIBRARY_PATH | |
| export LD_LIBRARY_PATH=$(pwd)/palace-install/lib64:$LD_LIBRARY_PATH | |
| cd $(pwd)/palace-build/palace-build/test/unit | |
| # Run tests | |
| mpirun -np $NUM_PROC_TEST_MAX ./unit-tests --skip-benchmarks | |
| - name: Run regression tests for examples/ | |
| env: | |
| NUM_PROC_TEST_MAX: '8' | |
| run: | | |
| # Configure environment | |
| if [[ "${{ matrix.compiler }}" == 'intel' ]] || \ | |
| [[ "${{ matrix.mpi }}" == 'intelmpi' ]] || \ | |
| [[ "${{ matrix.math-libs }}" == 'intelmkl' ]]; then | |
| source /opt/intel/oneapi/setvars.sh # Sets PATH, MKLROOT | |
| fi | |
| if [[ "${{ matrix.math-libs }}" == 'aocl' ]]; then | |
| export AOCLROOT=/opt/AMD/aocl/aocl-linux-gcc-4.1.0/gcc | |
| export LD_LIBRARY_PATH=$AOCLROOT/lib:$LD_LIBRARY_PATH | |
| fi | |
| export NUM_PROC_TEST=$(nproc 2> /dev/null || sysctl -n hw.ncpu) | |
| if [[ "$NUM_PROC_TEST" -gt "$NUM_PROC_TEST_MAX" ]]; then | |
| NUM_PROC_TEST=$NUM_PROC_TEST_MAX | |
| fi | |
| if [[ "${{ matrix.with-openmp }}" == 'true' ]]; then | |
| NUM_PROC_TEST=$(( NUM_PROC_TEST / 2 )) | |
| export OMP_NUM_THREADS=2 | |
| else | |
| export OMP_NUM_THREADS=1 | |
| fi | |
| export PATH=$(pwd)/palace-install/bin:$PATH | |
| # Run tests | |
| julia --project=test/examples -e 'using Pkg; Pkg.instantiate()' | |
| julia --project=test/examples --color=yes test/examples/runtests.jl |