fixed failing windows miniconda setup #1124
Workflow file for this run
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| # This workflow will install Python dependencies and run tests on | |
| # windows and linux systems with a variety of Python versions | |
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: # only upstream, won't trigger on forks! | |
| - cron: '0 0 * * *' # daily | |
| jobs: | |
| build: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| os: ['ubuntu-latest'] | |
| ymlfile: ['environment.yml'] | |
| include: | |
| - os: 'windows-latest' | |
| python-version: '3.10' | |
| ymlfile: 'environment.yml' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| environment-file: ${{ matrix.ymlfile }} # Ensure the env file is correctly defined | |
| micromamba-root-path: ~/micromamba # Optional, where to install micromamba | |
| - name: Initialize micromamba environment | |
| shell: bash -l {0} | |
| run: | | |
| source ~/micromamba/bin/micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader | |
| micromamba activate qa4sm_reader | |
| micromamba install python=${{ matrix.python-version }} -y | |
| - name: Print environment infos | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| micromamba list | |
| pip list | |
| which pip | |
| which python | |
| - name: Export Environment | |
| shell: bash -l {0} | |
| run: | | |
| mkdir -p artifacts | |
| filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| micromamba env export > artifacts/$filename | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts/* | |
| - name: Install package and test | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: bash -l {0} | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Submit Coveralls 👚 | |
| needs: build | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls && coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |