fixed failing windows miniconda setup #1127
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies and run tests on | |
| # windows and linux systems with a variety of Python versions | |
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: # only upstream, won't trigger on forks! | |
| - cron: '0 0 * * *' # daily | |
| jobs: | |
| linux-tests: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| os: ['ubuntu-latest'] | |
| ymlfile: ['environment.yml'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| environment-file: ${{ matrix.ymlfile }} # Ensure the env file is correctly defined | |
| micromamba-root-path: ~/micromamba # Optional, where to install micromamba | |
| - name: Initialize micromamba environment | |
| shell: bash -l {0} | |
| run: | | |
| micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader | |
| echo "source ~/micromamba/etc/profile.d/micromamba.sh" >> ~/.bashrc | |
| - name: Create and activate environment | |
| shell: bash -l {0} | |
| run: | | |
| source ~/micromamba/etc/profile.d/micromamba.sh | |
| micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }} | |
| micromamba activate qa4sm_reader | |
| - name: Print environment infos | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| micromamba list | |
| pip list | |
| which pip | |
| which python | |
| - name: Export Environment | |
| shell: bash -l {0} | |
| run: | | |
| mkdir -p artifacts | |
| filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| micromamba env export --name qa4sm_reader > artifacts/$filename | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts/* | |
| - name: Install package and test | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: bash -l {0} | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| windows-tests: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| os: ['windows-latest'] | |
| ymlfile: ['environment.yml'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| environment-file: ${{ matrix.ymlfile }} # Ensure the env file is correctly defined | |
| micromamba-root-path: ~/micromamba # Optional, where to install micromamba | |
| - name: Initialize micromamba environment | |
| shell: cmd | |
| run: | | |
| micromamba shell init -s cmd -p %USERPROFILE%\micromamba\envs\qa4sm_reader | |
| - name: Create and activate environment | |
| shell: cmd | |
| run: | | |
| call %USERPROFILE%\micromamba\etc\profile.d\micromamba.cmd | |
| micromamba create -y --name qa4sm_reader --file %USERPROFILE%\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }} | |
| micromamba activate qa4sm_reader | |
| - name: Print environment infos | |
| shell: cmd | |
| run: | | |
| micromamba info | |
| micromamba list | |
| pip list | |
| where pip | |
| where python | |
| - name: Export Environment | |
| shell: cmd | |
| run: | | |
| mkdir artifacts | |
| set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| micromamba env export --name qa4sm_reader > artifacts\%filename% | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts\* | |
| - name: Install package and test | |
| shell: cmd | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: cmd | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Submit Coveralls 👚 | |
| needs: [linux-tests, windows-tests] | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls && coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |