fixed failing windows miniconda setup #1133
Workflow file for this run
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| # This workflow will install Python dependencies and run tests on | |
| # Windows and Linux systems with a variety of Python versions | |
| # For more information see: | |
| # https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: # only upstream, won't trigger on forks! | |
| - cron: '0 0 * * *' # daily | |
| jobs: | |
| build: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| os: ['ubuntu-latest', 'windows-latest'] | |
| ymlfile: ['environment.yml'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| environment-file: ${{ matrix.ymlfile }} | |
| micromamba-root-path: ~/micromamba | |
| - name: Initialize micromamba environment | |
| shell: bash -l {0} | |
| run: | | |
| if [ "${{ runner.os }}" == "Linux" ]; then | |
| micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader | |
| micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }} | |
| echo "source ~/micromamba/etc/profile.d/micromamba.sh" >> ~/.bashrc | |
| else | |
| set "PATH=%PATH%;%USERPROFILE%\micromamba\bin" | |
| micromamba shell init -s cmd -p %USERPROFILE%\micromamba\envs\qa4sm_reader | |
| micromamba create -y --name qa4sm_reader --file %USERPROFILE%\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }} | |
| fi | |
| - name: Activate environment | |
| shell: bash -l {0} | |
| run: | | |
| if [ "${{ runner.os }}" == "Linux" ]; then | |
| source ~/micromamba/etc/profile.d/micromamba.sh | |
| micromamba activate qa4sm_reader | |
| else | |
| call %USERPROFILE%\micromamba\etc\profile.d\micromamba.cmd | |
| micromamba activate qa4sm_reader | |
| fi | |
| - name: Print environment infos | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| micromamba list | |
| pip list | |
| if [ "${{ runner.os }}" == "Linux" ]; then | |
| which pip | |
| which python | |
| else | |
| where pip | |
| where python | |
| fi | |
| - name: Export Environment | |
| shell: bash -l {0} | |
| run: | | |
| mkdir -p artifacts | |
| filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| micromamba env export --name qa4sm_reader > artifacts/$filename | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts/* | |
| - name: Install package and test | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: bash -l {0} | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Submit Coveralls 👚 | |
| needs: build | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls && coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |