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separated windows and linux workflows, disabled mamba in windows work…
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# This workflow will install Python dependencies and run tests on | ||
# windows and linux systems with a variety of Python versions | ||
# Windows and Linux systems with a variety of Python versions | ||
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# For more information see: | ||
# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | ||
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name: tests | ||
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on: | ||
push: | ||
pull_request: | ||
workflow_dispatch: | ||
schedule: # only upstream, won't trigger on forks! | ||
- cron: '0 0 * * *' # daily | ||
push: | ||
pull_request: | ||
workflow_dispatch: | ||
schedule: # only upstream, won't trigger on forks! | ||
- cron: '0 0 * * *' # daily | ||
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||
jobs: | ||
build: | ||
name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
python-version: [ '3.8', '3.9', '3.10' ] | ||
os: ["ubuntu-latest"] | ||
ymlfile: ["environment.yml"] | ||
include: | ||
- os: "windows-latest" | ||
python-version: "3.10" | ||
ymlfile: "environment.yml" | ||
steps: | ||
- uses: actions/checkout@v2 | ||
with: | ||
submodules: true | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
miniconda-version: "latest" | ||
auto-update-conda: true | ||
python-version: ${{ matrix.python-version }} | ||
environment-file: ${{ matrix.ymlfile }} | ||
mamba-version: "*" | ||
activate-environment: qa4sm_reader # todo: must match with name in environment.yml | ||
auto-activate-base: false | ||
- name: Print environment infos | ||
shell: bash -l {0} | ||
run: | | ||
conda info -a | ||
conda list | ||
pip list | ||
which pip | ||
which python | ||
- name: Export Environment | ||
shell: bash -l {0} | ||
run: | | ||
mkdir -p artifacts | ||
filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | ||
conda env export --no-builds | grep -v "prefix" > artifacts/$filename | ||
- name: Upload Artifacts | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | ||
path: artifacts/* | ||
- name: Install package and test | ||
shell: bash -l {0} | ||
run: | | ||
pip install -e . | ||
pytest | ||
- name: Upload Coverage | ||
shell: bash -l {0} | ||
run: | | ||
pip install coveralls && coveralls --service=github | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | ||
COVERALLS_PARALLEL: true | ||
coveralls: | ||
name: Submit Coveralls 👚 | ||
needs: build | ||
runs-on: ubuntu-latest | ||
container: python:3-slim | ||
steps: | ||
- name: Finished | ||
run: | | ||
pip3 install --upgrade coveralls && coveralls --service=github --finish | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
linux-tests: | ||
name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
python-version: ['3.8', '3.9', '3.10'] | ||
os: ['ubuntu-latest'] | ||
ymlfile: ['environment.yml'] | ||
steps: | ||
- uses: actions/checkout@v2 | ||
with: | ||
submodules: true | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
miniconda-version: 'latest' | ||
auto-update-conda: true | ||
python-version: ${{ matrix.python-version }} | ||
environment-file: ${{ matrix.ymlfile }} | ||
mamba-version: '*' | ||
activate-environment: qa4sm_reader # todo: must match with name in environment.yml | ||
auto-activate-base: false | ||
- name: Print environment infos | ||
shell: bash -l {0} | ||
run: | | ||
conda info -a | ||
conda list | ||
pip list | ||
which pip | ||
which python | ||
- name: Export Environment | ||
shell: bash -l {0} | ||
run: | | ||
mkdir -p artifacts | ||
filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | ||
conda env export --no-builds | grep -v "prefix" > artifacts/$filename | ||
- name: Upload Artifacts | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | ||
path: artifacts/* | ||
- name: Install package and test | ||
shell: bash -l {0} | ||
run: | | ||
pip install -e . | ||
pytest | ||
- name: Upload Coverage | ||
shell: bash -l {0} | ||
run: | | ||
pip install coveralls && coveralls --service=github | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | ||
COVERALLS_PARALLEL: true | ||
|
||
windows-tests: | ||
name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
python-version: ['3.10'] | ||
os: ['windows-latest'] | ||
ymlfile: ['environment.yml'] | ||
steps: | ||
- uses: actions/checkout@v2 | ||
with: | ||
submodules: true | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
miniconda-version: 'latest' | ||
auto-update-conda: true | ||
python-version: ${{ matrix.python-version }} | ||
environment-file: ${{ matrix.ymlfile }} | ||
activate-environment: qa4sm_reader # todo: must match with name in environment.yml | ||
auto-activate-base: false | ||
- name: Print environment infos | ||
shell: cmd | ||
run: | | ||
conda info -a | ||
conda list | ||
pip list | ||
where pip | ||
where python | ||
- name: Export Environment | ||
shell: cmd | ||
run: | | ||
mkdir artifacts | ||
set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | ||
conda env export --no-builds | findstr /v "prefix" > artifacts/%filename% | ||
- name: Upload Artifacts | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | ||
path: artifacts/* | ||
- name: Install package and test | ||
shell: cmd | ||
run: | | ||
conda activate qa4sm_reader | ||
pip install -e . | ||
pytest | ||
- name: Upload Coverage | ||
shell: cmd | ||
run: | | ||
pip install coveralls && coveralls --service=github | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | ||
COVERALLS_PARALLEL: true | ||
|
||
coveralls: | ||
name: Submit Coveralls 👚 | ||
needs: [linux-tests, windows-tests] | ||
runs-on: ubuntu-latest | ||
container: python:3-slim | ||
steps: | ||
- name: Finished | ||
run: | | ||
pip3 install --upgrade coveralls && coveralls --service=github --finish | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |
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|
@@ -71,3 +71,4 @@ tests/test_data/out/* | |
*/_local_scripts/* | ||
.coverage* | ||
.artifacts/* | ||
.vscode |