solving micromamba env creation

awst-austria · Oct 7, 2024 · 5eb80fb · 5eb80fb
1 parent eebe4c3
commit 5eb80fb
Showing 1 changed file with 66 additions and 79 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -1,5 +1,8 @@
 # This workflow will install Python dependencies and run tests on
-# windows and linux systems with a variety of Python versions
+# Windows and Linux systems with a variety of Python versions
+
+# For more information see:
+# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
 
 name: tests
 
@@ -11,14 +14,18 @@ on:
         - cron: '0 0 * * *' # daily
 
 jobs:
-    linux-tests:
+    build:
         name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
         runs-on: ${{ matrix.os }}
         strategy:
             matrix:
                 python-version: ['3.8', '3.9', '3.10']
                 os: ['ubuntu-latest']
                 ymlfile: ['environment.yml']
+                include:
+                    - os: 'windows-latest'
+                      python-version: '3.10'
+                      ymlfile: 'environment.yml'
         steps:
             - uses: actions/checkout@v2
               with:
@@ -27,23 +34,40 @@ jobs:
             - uses: mamba-org/setup-micromamba@v1
               with:
                   micromamba-version: 'latest'
-                  environment-file: ${{ matrix.ymlfile }} # Ensure the env file is correctly defined
-                  micromamba-root-path: ~/micromamba # Optional, where to install micromamba
+                  environment-file: ${{ matrix.ymlfile }}
+                  micromamba-root-path: ~/micromamba
 
-            - name: Initialize micromamba environment
+            - name: Initialize micromamba environment (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader
+                  micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }}
                   echo "source ~/micromamba/etc/profile.d/micromamba.sh" >> ~/.bashrc
 
-            - name: Create and activate environment
+            - name: Initialize micromamba environment (Windows)
+              if: runner.os == 'Windows'
+              shell: cmd
+              run: |
+                  micromamba shell init -s cmd -p %USERPROFILE%\micromamba\envs\qa4sm_reader
+                  micromamba create -y --name qa4sm_reader --file %USERPROFILE%\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }}
+
+            - name: Activate environment (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   source ~/micromamba/etc/profile.d/micromamba.sh
-                  micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }}
                   micromamba activate qa4sm_reader
 
-            - name: Print environment infos
+            - name: Activate environment (Windows)
+              if: runner.os == 'Windows'
+              shell: cmd
+              run: |
+                  call %USERPROFILE%\micromamba\etc\profile.d\micromamba.cmd
+                  micromamba activate qa4sm_reader
+
+            - name: Print environment infos (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   micromamba info
@@ -52,26 +76,54 @@ jobs:
                   which pip
                   which python
 
-            - name: Export Environment
+            - name: Print environment infos (Windows)
+              if: runner.os == 'Windows'
+              shell: cmd
+              run: |
+                  micromamba info
+                  micromamba list
+                  pip list
+                  where pip
+                  where python
+
+            - name: Export Environment (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   mkdir -p artifacts
                   filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
                   micromamba env export --name qa4sm_reader > artifacts/$filename
 
+            - name: Export Environment (Windows)
+              if: runner.os == 'Windows'
+              shell: cmd
+              run: |
+                  mkdir artifacts
+                  set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
+                  micromamba env export --name qa4sm_reader > artifacts\%filename%
+
             - name: Upload Artifacts
               uses: actions/upload-artifact@v4
               with:
                   name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }}
                   path: artifacts/*
 
-            - name: Install package and test
+            - name: Install package and test (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   pip install -e .
                   pytest
 
-            - name: Upload Coverage
+            - name: Install package and test (Windows)
+              if: runner.os == 'Windows'
+              shell: cmd
+              run: |
+                  pip install -e .
+                  pytest
+
+            - name: Upload Coverage (Linux)
+              if: runner.os == 'Linux'
               shell: bash -l {0}
               run: |
                   pip install coveralls && coveralls --service=github
@@ -80,73 +132,8 @@ jobs:
                   COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
                   COVERALLS_PARALLEL: true
 
-    windows-tests:
-        name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
-        runs-on: ${{ matrix.os }}
-        strategy:
-            matrix:
-                python-version: ['3.10']
-                os: ['windows-latest']
-                ymlfile: ['environment.yml']
-        steps:
-            - uses: actions/checkout@v2
-              with:
-                  submodules: true
-
-            - name: Install Micromamba
-              shell: cmd
-              run: |
-                  curl -Ls https://micromamba.snakepit.net/api/micromamba/win-64/latest | tar -xvj -C C:\micromamba\bin
-                  set PATH=C:\micromamba\bin;%PATH%
-                  micromamba --version
-
-            - uses: mamba-org/setup-micromamba@v1
-              with:
-                  micromamba-version: 'latest'
-                  environment-file: ${{ matrix.ymlfile }}
-                  micromamba-root-path: C:\micromamba
-
-            - name: Initialize micromamba environment
-              shell: cmd
-              run: |
-                  micromamba shell init -s cmd -p C:\micromamba\envs\qa4sm_reader
-
-            - name: Create and activate environment
-              shell: cmd
-              run: |
-                  call C:\micromamba\etc\profile.d\micromamba.cmd
-                  micromamba create -y --name qa4sm_reader --file C:\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }}
-                  micromamba activate qa4sm_reader
-
-            - name: Print environment infos
-              shell: cmd
-              run: |
-                  micromamba info
-                  micromamba list
-                  pip list
-                  where pip
-                  where python
-
-            - name: Export Environment
-              shell: cmd
-              run: |
-                  mkdir artifacts
-                  set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
-                  micromamba env export --name qa4sm_reader > artifacts\%filename%
-
-            - name: Upload Artifacts
-              uses: actions/upload-artifact@v4
-              with:
-                  name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }}
-                  path: artifacts\*
-
-            - name: Install package and test
-              shell: cmd
-              run: |
-                  pip install -e .
-                  pytest
-
-            - name: Upload Coverage
+            - name: Upload Coverage (Windows)
+              if: runner.os == 'Windows'
               shell: cmd
               run: |
                   pip install coveralls && coveralls --service=github
@@ -157,7 +144,7 @@ jobs:
 
     coveralls:
         name: Submit Coveralls 👚
-        needs: [linux-tests, windows-tests]
+        needs: build
         runs-on: ubuntu-latest
         container: python:3-slim
         steps: