Update environment.yml #81
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checking if defining pyscaffold in the env helps fixing the problem with failing tests
…der into fix-running-tests
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wpreimes
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Oct 10, 2024
…a-744 (#77) * intial * started adapting * adapted existing code to properly handle temporal sub-windows, including renaming the output files and figure titles accordingly * before testing * fig titles and filenames now always contain the default or temporal sub-window case's name. also, maps are only created fo r the default case * intermediate saving * added all code required to generate comparison boxplots * fully integrated compariosn plots and all plots now have the logo instead of the watermark * all statistics .csv files are now stroed in a dedicated zip archive * intermediate commit * Fix bugs with metadata plots * automatic extraction of temporal sub-window names from provided netcdf file and enhanced type hints * testing of tcol metrics plotting * removed debugging statements, implemented bug fix for metadata plot generationwit tcol metrics * comparison boxplots of tcol metrics are not created * implemented saving of created figures in one go for multiple filetypes * code for netcdf file transcription to new qa4sm nc structure * removed accidentally staged restructured files * implemented means for transcription for all test files * added automatic netCDF file transcription prior to tests and corrected for temp. sub-win. dimension as additional item in `QA4SMImage.varnames` in `test_image.py::test_load_vars` * pt2: added automatic netCDF file transcription prior to tests and corrected for temp. sub-win. dimension as additional item in `QA4SMImage.varnames` in `test_image.py::test_load_vars` * netcdf_transcription.py and intra_annual_temp_windows.py now are part of the `qa4sm_reader` package, isntead of `qa4sm`. Further, the globals file was adapted accordingly and now contains all vars required. `qa4sm` imports these specific vars then from the `qa4sm_reader.globals` file. Lastly, `qa4sm_reader.img.QA4SMImg` was adapted to check if a dimension corresponding to temporal sub-windows exists in the specified netCDF file and if not automatically transcribes the loaded dataset. Tests were adapted accordingly. * code cleaning. * code cleaning * introduced function `qa4sm_reader.utils.filter_out_self_combination_tcmetric_vars()` to exclude TC metric vars of same reference and metric dataset from being plotted * added pytesmo dependency * added MANIFEST.in to correctly install the static dir requried for inclusion of logo as watermark * deleted superflous files * adapted packaging of reader to incorporat the static dir containing the logo * tests for intra_annual_temp_windows * added tests to test_utils and made sure they run first * started test_netcdf_transcription.py * fixed test_logo_exists * fixing test_keep_pytesmo_ncfile * tests for netcdf_transcription * finished test development for intra annual metrics and adapation of existing tests * Update environment.yml (#81) * Update environment.yml checking if defining pyscaffold in the env helps fixing the problem with failing tests * Update CI and dependency list * Update env * Update CI * Update env * Update CI --------- Co-authored-by: Wolfgang Preimesberger <[email protected]> * added test to check intra-annual metric related plots and proper file transcription * fixed tests/test_netcdf_transcription.py::test_correct_file_transcription * fixed tests/test_netcdf_transcription.py::test_correct_file_transcription * fixed windows test failing * fixed mamba workflow issue * bug fix for obtaining amount of chars from Path object --------- Co-authored-by: Wolfgang Preimesberger <[email protected]> Co-authored-by: Monika Tercjak <[email protected]>
wpreimes
added a commit
that referenced
this pull request
Oct 10, 2024
…a-744 (#77) (#83) * intial * started adapting * adapted existing code to properly handle temporal sub-windows, including renaming the output files and figure titles accordingly * before testing * fig titles and filenames now always contain the default or temporal sub-window case's name. also, maps are only created fo r the default case * intermediate saving * added all code required to generate comparison boxplots * fully integrated compariosn plots and all plots now have the logo instead of the watermark * all statistics .csv files are now stroed in a dedicated zip archive * intermediate commit * Fix bugs with metadata plots * automatic extraction of temporal sub-window names from provided netcdf file and enhanced type hints * testing of tcol metrics plotting * removed debugging statements, implemented bug fix for metadata plot generationwit tcol metrics * comparison boxplots of tcol metrics are not created * implemented saving of created figures in one go for multiple filetypes * code for netcdf file transcription to new qa4sm nc structure * removed accidentally staged restructured files * implemented means for transcription for all test files * added automatic netCDF file transcription prior to tests and corrected for temp. sub-win. dimension as additional item in `QA4SMImage.varnames` in `test_image.py::test_load_vars` * pt2: added automatic netCDF file transcription prior to tests and corrected for temp. sub-win. dimension as additional item in `QA4SMImage.varnames` in `test_image.py::test_load_vars` * netcdf_transcription.py and intra_annual_temp_windows.py now are part of the `qa4sm_reader` package, isntead of `qa4sm`. Further, the globals file was adapted accordingly and now contains all vars required. `qa4sm` imports these specific vars then from the `qa4sm_reader.globals` file. Lastly, `qa4sm_reader.img.QA4SMImg` was adapted to check if a dimension corresponding to temporal sub-windows exists in the specified netCDF file and if not automatically transcribes the loaded dataset. Tests were adapted accordingly. * code cleaning. * code cleaning * introduced function `qa4sm_reader.utils.filter_out_self_combination_tcmetric_vars()` to exclude TC metric vars of same reference and metric dataset from being plotted * added pytesmo dependency * added MANIFEST.in to correctly install the static dir requried for inclusion of logo as watermark * deleted superflous files * adapted packaging of reader to incorporat the static dir containing the logo * tests for intra_annual_temp_windows * added tests to test_utils and made sure they run first * started test_netcdf_transcription.py * fixed test_logo_exists * fixing test_keep_pytesmo_ncfile * tests for netcdf_transcription * finished test development for intra annual metrics and adapation of existing tests * Update environment.yml (#81) * Update environment.yml checking if defining pyscaffold in the env helps fixing the problem with failing tests * Update CI and dependency list * Update env * Update CI * Update env * Update CI --------- * added test to check intra-annual metric related plots and proper file transcription * fixed tests/test_netcdf_transcription.py::test_correct_file_transcription * fixed tests/test_netcdf_transcription.py::test_correct_file_transcription * fixed windows test failing * fixed mamba workflow issue * bug fix for obtaining amount of chars from Path object --------- Co-authored-by: Nicolas F. Bader <[email protected]> Co-authored-by: Monika Tercjak <[email protected]>
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checking if defining pyscaffold in the env helps fixing the problem with failing tests