Combined_Stress_Response

Scripts to analyze transcriptional response to combinations of stresses

data_analysis: starting with differential expression results, compare single and combined stresses and cluster by Rasmussen's methood

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
CNN_TF2_omic.py		CNN_TF2_omic.py
FilterDF_Overlap.py		FilterDF_Overlap.py
KmeansClustering.R		KmeansClustering.R
README.md		README.md
arules.R		arules.R
association_mining.py		association_mining.py
combine_Agilent_key.py		combine_Agilent_key.py
combined_df.py		combined_df.py
convert_to_df.py		convert_to_df.py
data_analysis.R		data_analysis.R
get_kmers_4gff.py		get_kmers_4gff.py
gff_to_bed.py		gff_to_bed.py
knownTFBMs_df.py		knownTFBMs_df.py
make_RMA.py		make_RMA.py
make_mapping_runcc.py		make_mapping_runcc.py
make_negative_cluster.R		make_negative_cluster.R
make_runcc_CombineFiltered.py		make_runcc_CombineFiltered.py
make_runcc_CombinedCatAttributes.py		make_runcc_CombinedCatAttributes.py
make_runcc_FeatSel.py		make_runcc_FeatSel.py
make_runcc_KnownKmers.py		make_runcc_KnownKmers.py
make_runcc_KnownTFBM.py		make_runcc_KnownTFBM.py
make_runcc_Mapped2GFF.py		make_runcc_Mapped2GFF.py
make_runcc_OverlapFilter.py		make_runcc_OverlapFilter.py
make_runcc_RF.py		make_runcc_RF.py
make_runcc_combine.py		make_runcc_combine.py
name		name
removeAffyDups.py		removeAffyDups.py
testgit.rtf		testgit.rtf

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