fix library linking error and run time warning on 64 bit machine

brad/build.sh

@@ -1,11 +1,20 @@
 #! /bin/bash
+if [ "$1" != "omhelp" ] && [ "$1" != "sdist" ] && [ "$1" != "all" ]
+then
+	echo "build.sh option, where option is one of the following"
+	echo "omhelp: stop when the help is done"
+	echo "sdist:  stop when the done building the source distribution"
+	echo "all:    go all the way"
+	exit 1
+fi
+option="$1"
 # ---------------------------------------------------------------------
 cppad_version="20080919.0"       # cppad release version we are using
 yyyymmdd=`date +%G%m%d`          # todays year, month, and day
 # ---------------------------------------------------------------------
 # Note for Sebastian: this choice forces cppad to be dowloanded each time. 
 # I like to use $HOME/install to speed up testing.
-cppad_parent_dir="."             # directory for cppad tarball etc
+cppad_parent_dir="$HOME/install"             # directory for cppad tarball etc
 # ---------------------------------------------------------------------
 omhelp_location=`which omhelp`
 if [ "$omhelp_location" = "" ]
@@ -75,7 +84,7 @@ then
 		exit 1
 	fi
 	cd ..
-	if [ "$1" == "omhelp" ]
+	if [ "$option" == "omhelp" ]
 	then
 		exit 0
 	fi
@@ -130,6 +139,10 @@ include test_more.py
 include test_example.py
 EOF
 ./setup.py sdist
+if [ "$option" == "sdist" ]
+then
+	exit 0
+fi
 echo "# Extract the source distribution -------------------------------" 
 cmd="cd dist"
 echo "$cmd"

brad/omh/install.omh

@@ -32,8 +32,8 @@ $index download, pycppad$$
 $index pycppad, download$$
 Download the file
 $href%
-	http://www.seanet.com/~bradbell/pycppad-20090209.tar.gz%
-	pycppad-20090209.tar.gz
+	http://www.seanet.com/~bradbell/pycppad-20090210.tar.gz%
+	pycppad-20090210.tar.gz
 %$$
 and store it on your machine.
 
@@ -44,14 +44,14 @@ $index extract, pycppad$$
 $index pycppad, extract$$
 On unix, you could use the command
 $codep
-	tar -xvzf  pycppad-20090209.tar.gz
+	tar -xvzf  pycppad-20090210.tar.gz
 $$
-which would create the directory $code pycppad-20090209$$.
+which would create the directory $code pycppad-20090210$$.
 
 $head Required Setup Information$$
 The value of the following setup variables, in the file
 $codep
-	pycppad-20090209/setup.py
+	pycppad-20090210/setup.py
 $$
 must be set to agree with your system:
 $code
@@ -64,7 +64,7 @@ properly set this information
 $head Building$$
 $index build, pycppad$$
 $index pycppad, build$$
-Change into the directory $code pycppad-20090209$$ and execute the command
+Change into the directory $code pycppad-20090210$$ and execute the command
 $codep
 	./setup.py build_ext --inplace --debug --undef NDEBUG
 $$
@@ -98,7 +98,7 @@ $index test, pycppad$$
 $index pycppad, test$$
 You can test of all the 
 $cref/examples/example/$$ in the $code pycppad$$ documentation.
-Change into the directory $code pycppad-20090209$$ and execute the command
+Change into the directory $code pycppad-20090210$$ and execute the command
 $codep
 	python test_example.py
 $$
@@ -115,7 +115,7 @@ You may or may not preform this step:
 $pre
 
 $$
-Change into the directory $code pycppad-20090209$$ and execute the command
+Change into the directory $code pycppad-20090210$$ and execute the command
 $codei%
 	python setup.py install --prefix=%prefix%
 %$$
@@ -134,7 +134,7 @@ an uninstall command. You can uninstall the $code pycppad$$ package
 by removing the entries
 $codei%
 	%prefix%/lib/python%major%.%minor%/site-packages/pycppad
-	%prefix%/lib/python%major%.%minor%/site-packages/pycppad-20090209.egg-info
+	%prefix%/lib/python%major%.%minor%/site-packages/pycppad-20090210.egg-info
 	%prefix%/share/doc/pycppad
 %$$
 where $icode major$$ and $icode minor$$
@@ -152,7 +152,7 @@ $codei%
 %$$
 unless the distribution directory
 $codep
-	pycppad-20090209
+	pycppad-20090210
 $$
 or (provided you installed $code pycppad$$) the installation directory
 $codei%
@@ -174,7 +174,7 @@ $codei%
 $head pycppad Documentation$$
 The documentation for $code pycppad$$ starts out in the directory
 $codep
-	pycppad-20090209/doc
+	pycppad-20090210/doc
 $$
 During the installation process, it is copied to the directory
 $codei%

brad/pycppad/vec2array.cpp

@@ -6,10 +6,10 @@
 
 namespace pycppad {
 array vec2array(double_vec& vec)
-{	int n = static_cast<int>( vec.size() );
+{	npy_intp n = static_cast<npy_intp>( vec.size() );
 	PYCPPAD_ASSERT( n >= 0 , "");
 
-	object obj(handle<>( PyArray_FromDims(1, &n, PyArray_DOUBLE) ));
+	object obj(handle<>( PyArray_SimpleNew(1, &n, PyArray_DOUBLE) ));
 	double *ptr = static_cast<double*> ( PyArray_DATA (
 		reinterpret_cast<PyArrayObject*> ( obj.ptr() )
 	));

brad/pycppad/vector.cpp

@@ -7,7 +7,7 @@ namespace pycppad {
 // constructor from a python array
 vec<double>::vec(array& py_array)
 {	// get array info
-	int* dims_ptr = PyArray_DIMS(py_array.ptr());
+	npy_intp* dims_ptr = PyArray_DIMS(py_array.ptr());
 	int length    = dims_ptr[0];
 
 	// check array info
@@ -123,7 +123,7 @@ template <class Scalar>
 vec<Scalar>::vec(array& py_array)
 {
 	// get array info
-	int* dims_ptr = PyArray_DIMS(py_array.ptr());
+	npy_intp* dims_ptr = PyArray_DIMS(py_array.ptr());
 	int length    = dims_ptr[0];
 
 	// check array info

brad/setup.template

@@ -1,10 +1,5 @@
 #!/usr/bin/env python
 # ---------------------------------------------------------------------
-# Values set by build.sh
-cppad_parent_dir  = # cppad tarball and distribution directory will be here
-package_version   = # date in yyyymmdd format corresonding to this distribution
-cppad_version     = # version of CppAD corresponding to this version of pycppad
-# ---------------------------------------------------------------------
 # BEGIN USER SETTINGS
 boost_lib_dir = '/usr/lib' # Directory where boost::python library is located
 boost_python_lib  = 'boost_python' # name of the library in that directory
@@ -16,9 +11,15 @@ boost_python_lib  = 'boost_python' # name of the library in that directory
 # See  http://docs.python.org/install/index.html
 # for documentation on how to use the script setup.py 
 # ---------------------------------------------------------------------
+# Values set by build.sh
+cppad_parent_dir  = # cppad tarball and distribution directory will be here
+package_version   = # date in yyyymmdd format corresonding to this distribution
+cppad_version     = # version of CppAD corresponding to this version of pycppad
+# ---------------------------------------------------------------------
 import os
 import sys
 from distutils.core import setup, Extension
+from numpy.distutils.misc_util import get_numpy_include_dirs
 # ---------------------------------------------------------------------
 boost_python_lib_path = boost_lib_dir + '/lib' + boost_python_lib + '.so'
 if not os.access ( boost_python_lib_path , os.R_OK ) :
@@ -67,7 +68,8 @@ package_data_files     = [ ('share/doc/pycppad', doc_files ) ]
 package_license        = 'BSD'
 #
 cppad_extension_name         = 'pycppad' + '/cppad_'
-cppad_extension_include_dirs = [ cppad_include_dir ]
+cppad_extension_include_dirs = get_numpy_include_dirs()
+cppad_extension_include_dirs.append( cppad_include_dir )
 cppad_extension_library_dirs = [ boost_lib_dir ]
 cppad_extension_libraries    = [ boost_python_lib ]
 cppad_extension_sources      = [