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AlignGraph stop without error message #34

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YFelixChen opened this issue Nov 18, 2018 · 0 comments
Open

AlignGraph stop without error message #34

YFelixChen opened this issue Nov 18, 2018 · 0 comments

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@YFelixChen
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Hi,
I tried to extend my SPAdes result with AlignGraph, but it stop without error message

CHROMOSOME 0:
(1) Chromosome loaded
(2) Contig alignment loaded
Killed

Here is my command:
~/AlignGraph/AlignGraph --read1 S_aureus_trimmed_1.fasta --read2 S_aureus_trimmed_2.fasta --contig scaffolds.fasta --genome Reference.fasta --distanceLow 230 --distanceHigh 1500 --extendedContig out/extendedContig.fasta --remainingContig out/remainContig.fasta

Thank you
Felix
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@YFelixChen