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37 Open 5 Closed
37 Open 5 Closed
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Issues list

Command line specification
#42 opened Mar 22, 2023 by zcalamari
BLAT ERROR
#41 opened Dec 17, 2020 by carlferr
Makefile
#38 opened Nov 15, 2019 by dslater82
How to make AlignGraph to use pBLAT by specifying the number of threads.
#37 opened May 5, 2019 by chirrie
2
distanceLow and insertLow parameter calculation from paired-end reads
#36 opened May 5, 2019 by chirrie
alignGraph failed with error: INCONSISTENT PE FILES!
#35 opened Jan 3, 2019 by wul88
1
AlignGraph stop without error message
#34 opened Nov 18, 2018 by YFelixChen
Reference Genome for Eukaryotes
#33 opened Jan 28, 2018 by GabrielaPinho
1
Aligngraph comes back with 'CANNOT OPEN FILE!'
#32 opened Oct 9, 2017 by lulux719
1
Extended Output
#31 opened Aug 31, 2017 by alex-b-chase
2
BOWTIE2 CALL FAILED
#30 opened Jul 25, 2017 by jimmyjiming
2
Crash when creating _short_initial_contigs_extended_contigs.* files
#29 opened Jul 11, 2017 by YannDussert
1
BLAT CALL FAILED! (New problem for existing issue)
#27 opened Jan 4, 2017 by cistarsa
9
Having trouble resuming
#26 opened Nov 17, 2016 by edraizen
1
BLAT/PBLAT issue "Maximum single piece size (5000) exceeded"
#25 opened Aug 5, 2016 by Schum1
6
Galaxy wrapper for AlignGraph
#24 opened Jul 11, 2016 by mictadlo
Parallelizing read grouping post alignment
#23 opened Jun 21, 2016 by ramprasadn
4
How to chose pblat instead of blat or nucmer
#22 opened May 30, 2016 by DHatziioanou
3
BLAT call fails
#21 opened May 19, 2016 by sandrasan
1
distanceLow and insertLow parameter calculation
#20 opened May 17, 2016 by sandrasan
4
PE read files that are not one-to-one mapped??
#19 opened Mar 2, 2016 by agombolay
Reference genome question regarding mate pairs
#18 opened Feb 23, 2016 by ergarzaz
1
BLAT call failed with Aligngraph
#17 opened Dec 24, 2015 by meetasunil
16
Support piping input from stdin
#16 opened Nov 24, 2015 by jvollme
1
AlignGraph getting stuck on Bowtie2-align
#15 opened Oct 27, 2015 by Anabaena
5
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