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1. picard picard Public

   Forked from broadinstitute/picard

   A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

   Java

2. fgbio fgbio Public

   Forked from fulcrumgenomics/fgbio

   Tools for working with genomic and high throughput sequencing data.

   Scala

3. interop interop Public

   Forked from Illumina/interop

   C++ Library to parse Illumina InterOp files

   C++

4. BaseSpace_Clarity_LIMS BaseSpace_Clarity_LIMS Public

   Forked from Illumina/BaseSpace_Clarity_LIMS

   API libraries, application examples, and custom tools for BaseSpace Clarity LIMS

   Python

5. PrimateAI PrimateAI Public

   Forked from Illumina/PrimateAI

   deep residual neural network for classifying the pathogenicity of missense mutations.

   Python

6. strelka strelka Public

   Forked from Illumina/strelka

   Strelka2 germline and somatic small variant caller

   C++