update renv and other minor additions

_variables.yml

@@ -10,6 +10,7 @@
 dissertation:
   doi: ""
   github: https://github.com/bbartholdy/endgame
+  version: "![GitHub release (with filter)](https://img.shields.io/github/v/release/bbartholdy/endgame)"
 
 intro: 
   version: "![Current version](https://img.shields.io/badge/Version-v2-blue)"

endgame.tex

@@ -101,6 +101,7 @@
 \newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{\strut#1\strut}}
 \newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
 \usepackage{booktabs}
+\usepackage{emptypage}
 \usepackage{amsthm}
 \makeatletter
 \def\thm@space@setup{%
@@ -109,22 +110,66 @@
 }
 \makeatother
 
+
+\makeatletter
+\def\cleardoublepage{\clearpage\if@twoside \ifodd\c@page\else
+\begingroup
+\mbox{}
+\vspace*{\fill}
+\begin{center}
+\textit{This page is unintentionally left blank.}
+\end{center}
+\vspace{\fill}
+\thispagestyle{empty}
+\newpage
+\if@twocolumn\mbox{}\newpage\fi
+\endgroup\fi\fi}
+\makeatother
+
+
 %% Chapter formatting
 
-%Options: Sonny, Lenny, Glenn, Conny, Rejne, Bjarne, Bjornstrup
-%\usepackage[Lenny]{fncychap}
+
+%\def\fourtytwo{"All right," said Deep Thought. "The Answer to the Great Question..."\\
+%"Yes..!"\\
+%"Of Life, the Universe and Everything..." said Deep Thought.\\
+%"Yes...!"\\
+%"Is..." said Deep Thought, and paused.\\
+%"Yes...!"\\
+%"Is..."\\
+%"Yes...!!!...?"\\
+%"Forty-two," said Deep Thought, with infinite majesty and calm.}
+\def\fourtytwo{"How many roads must a man walk down?"}
+\usepackage{fancyhdr}
+\pagestyle{fancy}
+\fancyhf{} % clear existing header/footer entries
+% Place Page X of Y on the right-hand
+% side of the footer
+%\fancyhead[LE]{\ifnum\value{page} = 42
+  %\huge\bfseries{\thepage}\else\thepage\fi}
+%\fancyhead[LE]{\ifnum\value{page} = 42
+%  \footnotesize\bfseries{\fourtytwo}\else\thepage\fi}
+%\fancyfoot[L]{\ifnum\value{page} = 42
+%\scriptsize\fourtytwo\fi}
+\fancyhead[LE]{\ifnum\value{page} = 42
+\textit\fourtytwo\else\thepage\enspace\MakeLowercase{\textsl{\leftmark}}\fi}
+\fancyhead[RO]{\MakeLowercase{\textsl{\rightmark}}\enspace\thepage}
+\renewcommand{\headrulewidth}{0pt}
+\renewcommand{\footrulewidth}{0pt}
 
 \usepackage{titlesec, blindtext, color} % titlesec needs `pandoc --variable subparagraph` to work
 \definecolor{gray75}{gray}{0.75}
 \newcommand{\hsp}{\hspace{20pt}}
 \titleformat{\chapter}[hang]{\Huge\bfseries}{\thechapter\hsp\textcolor{gray75}{|}\hsp}{0pt}{\Huge\bfseries}
 
 % chapter and section names in header
-\renewcommand{\chaptermark}[1]{\markboth{\MakeLowercase{\chaptername\ \thechapter\ -\ #1}}{}}
-\renewcommand*{\chaptermark}[1]{\markboth{\MakeLowercase{\chaptername\ \thechapter\ -\ #1}}{}}
+%\renewcommand{\chaptermark}[1]{\markboth{\MakeLowercase{\chaptername\_\thechapter\ <-\ #1}}{}}
+%\renewcommand{\chaptermark}[1]{\markboth{\MakeLowercase{\chaptername\_\thechapter\ <-\ #1}}{}}
+\renewcommand{\chaptermark}[1]{\markboth{\MakeLowercase{#1}}{}}
+\renewcommand{\chaptermark}[1]{\markboth{\MakeLowercase{#1}}{}}
 \renewcommand{\sectionmark}[1]{\markright{\MakeLowercase{#1}}{} }
 
-% fix header names for toc, lof, and lot
+% fix header names for toc, lof, and lot to match chapter and section names
 \usepackage{etoolbox}
 \patchcmd{\tableofcontents}{\MakeUppercase\contentsname}{\MakeLowercase\contentsname}{}{} 
 \patchcmd{\tableofcontents}{\MakeUppercase\contentsname}{\MakeLowercase\contentsname}{}{} % twice to remove on both sides of header
@@ -134,7 +179,6 @@
 \patchcmd{\listoftables}{\MakeUppercase\listtablename}{\MakeLowercase\listtablename}{}{} % twice to remove on both sides of header
 
 
-
 % modify captions for figures and tables
 \usepackage[labelfont=bf,
     labelsep=endash,
@@ -309,14 +353,24 @@
 Research Council under the European Union's Horizon 2020 research and
 innovation program, grant agreement number STG--677576
 (``HARVEST''). \\[0.4cm] 
-\textbf{Print version:} \href{https://doi.org/}{2024.04.0}
+\textbf{Print version:} \href{https://doi.org/10.5281/zenodo.11077009}{2024.04.1} \\[0.4cm] 
+ \textbf{Printed by:} Gildeprint \\[0.4cm] 
 \end{flushleft}
 \endgroup
 %% End: promotor and committee page %%
 
 \frontmatter
 %%%\maketitle
 %
+\clearpage
+\thispagestyle{empty}
+\vspace*{\fill}
+\vspace*{3cm}
+\hfill\textit{En bar røv at trutte i}
+\par
+\hfill\vspace*{4cm} Jan Bartholdy
+\vspace*{\fill}
+
 \renewcommand*\contentsname{Table of contents}
 {
 \setcounter{tocdepth}{2}
@@ -471,17 +525,9 @@ \chapter*{Open Science Statement}
 Science Framework (\href{https://doi.org/10.17605/OSF.IO/3YX8M}{DOI:
 10.17605/OSF.IO/3YX8M}).
 
+\begin{center}
 \includegraphics[width=1.04167in,height=\textheight]{figures/osf-qr.png}
-
-\clearpage
-\thispagestyle{empty}
-\vspace*{3cm}
-
-\hfill\textit{En bar røv at trutte i}
-
-\par
-
-\hfill\vspace*{4cm} Jan Bartholdy \vspace*{\fill}
+\end{center}
 
 \bookmarksetup{startatroot}
 
@@ -9192,10 +9238,10 @@ \section*{References cited}\label{references-cited-5}
 \phantomsection\label{supplementary-information}
 \bookmarksetup{startatroot}
 
-\chapter*{Supplementary information}
-\addcontentsline{toc}{chapter}{Supplementary information}
+\chapter*{Supplementary Information}
+\addcontentsline{toc}{chapter}{Supplementary Information}
 
-\markboth{Supplementary information}{Supplementary information}
+\markboth{Supplementary Information}{Supplementary Information}
 
 This dissertation contains a lot of supplementary materials. Therefore,
 none of it is included in the dissertation itself. I will instead