Merge pull request #72 from bento-platform/fix/missing-prod-womtool

fix: missing WOMtool in prod docker img
bento-platform · Mar 25, 2024 · 0982e0a · 0982e0a
2 parents 1b7704a + 42561fb
commit 0982e0a
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diff --git a/Dockerfile b/Dockerfile
@@ -18,7 +18,7 @@ RUN apt-get update -y && \
     cp -r vcf2maf/data /opt/data && \
     rm -rf vcf2maf
 
-# Install Cromwell + WOMtool
+# Download Cromwell + WOMtool
 ENV CROMWELL_VERSION=86
 WORKDIR /
 RUN curl -L \
@@ -122,8 +122,9 @@ RUN poetry install --without dev
 # - Copy VCF2MAF
 COPY --from=downloaded-deps /opt /opt
 
-# - Copy Cromwell
+# - Copy Cromwell + WOMtool
 COPY --from=downloaded-deps /cromwell.jar /cromwell.jar
+COPY --from=downloaded-deps /womtool.jar /womtool.jar
 
 # - Copy Ensembl-VEP
 COPY --from=ensemblorg/ensembl-vep:release_111.0 /usr/share/perl/5.34.0/CPAN /opt/vep