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  1. mcclintock mcclintock Public

    Meta-pipeline to identify transposable element insertions using next generation sequencing data

    Python 93 30

  2. TELR TELR Public

    TELR is a fast non-reference transposable element detector from long read sequencing data.

    Python 32 11

  3. drosophila-transposons drosophila-transposons Public

    Drosophila transposable element canonical sequences

    Rich Text Format 27 11

  4. ngs_te_mapper ngs_te_mapper Public

    Software for detecting transposable element insertions from next-generation sequencing data

    R 14 6

  5. ngs_te_mapper2 ngs_te_mapper2 Public

    Software for detecting transposable element insertions from next-generation sequencing data

    Python 9 1

  6. ecologIE ecologIE Public

    Tools for information extraction from the ecological literature

    Shell 6 1

Repositories

Showing 10 of 20 repositories
  • bergmanlab.github.io Public
    bergmanlab/bergmanlab.github.io’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jul 18, 2024
  • STELR Public

    STELR is Snakemake-enabled bioinformatics system for detecting transposable elements in long read sequencing data.

    bergmanlab/STELR’s past year of commit activity
    Python 0 BSD-2-Clause 0 0 0 Updated May 24, 2024
  • mcclintock Public

    Meta-pipeline to identify transposable element insertions using next generation sequencing data

    bergmanlab/mcclintock’s past year of commit activity
    Python 93 30 8 0 Updated Jan 16, 2024
  • TELR Public

    TELR is a fast non-reference transposable element detector from long read sequencing data.

    bergmanlab/TELR’s past year of commit activity
    Python 32 BSD-2-Clause 11 9 0 Updated Jul 27, 2023
  • ngs_te_mapper2 Public

    Software for detecting transposable element insertions from next-generation sequencing data

    bergmanlab/ngs_te_mapper2’s past year of commit activity
    Python 9 BSD-2-Clause 1 2 0 Updated Feb 24, 2023
  • enrichmenTE Public

    Software for the analysis of LTR retrotransposon insertions in PCR-enriched NGS samples

    bergmanlab/enrichmenTE’s past year of commit activity
    Python 1 0 0 0 Updated Feb 15, 2023
  • yeast-transposons Public

    Saccharomyces transposable element canonical sequences

    bergmanlab/yeast-transposons’s past year of commit activity
    Shell 4 CC0-1.0 0 0 0 Updated Jan 17, 2023
  • drosophila-transposons Public

    Drosophila transposable element canonical sequences

    bergmanlab/drosophila-transposons’s past year of commit activity
    Rich Text Format 27 CC0-1.0 11 15 0 Updated Jul 11, 2022
  • TIDAL Public Forked from laulabbumc/TIDAL1.2
    bergmanlab/TIDAL’s past year of commit activity
    Perl 0 MIT 2 0 0 Updated Jun 11, 2021
  • ngs_te_mapper Public

    Software for detecting transposable element insertions from next-generation sequencing data

    bergmanlab/ngs_te_mapper’s past year of commit activity
    R 14 BSD-3-Clause 6 0 0 Updated Mar 12, 2021
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