add missing arguments to command

--strip-suffix seems absent from the beginning
--discard-cassava was apparently forgotten in galaxyproject#3704

xref galaxyproject#4095

tools/cutadapt/cutadapt.xml

@@ -134,7 +134,7 @@ $filter_options.discard_untrimmed
 #if str($filter_options.max_expected_errors):
     --max-expected-errors=$filter_options.max_expected_errors
 #end if
-
+$filter_options.discard_cassava
 
 #if str($read_mod_options.quality_cutoff) != '0':
    --quality-cutoff=$read_mod_options.quality_cutoff
@@ -143,6 +143,9 @@ $filter_options.discard_untrimmed
     --nextseq-trim=$read_mod_options.nextseq_trim
 #end if
 $read_mod_options.trim_n
+#if $read_mod_options.strip_suffix != ''
+    --strip-suffix $read_mod_options.strip_suffix
+#end if
 #if str($read_mod_options.shorten_options.shorten_values) == 'True':
     #if str($read_mod_options.shorten_options.shorten_end) == '3prime'
         --length=$read_mod_options.shorten_options.length

tools/cutadapt/macros.xml

@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">3.5</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@FASTQ_TYPES@">fastq.gz,fastq,fasta</token>
     <xml name="edam_ontology">
         <edam_topics>